Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5180g00004 ATGGGGTTTCAATTTTTCTTTAGTTTCTTCCTTTTGTTACTGCCTACATTCTCTTCCTCCGAATATCTTGGGAACAACCTTCTATCTAATCGGAAAGTATTCCTCAAAGAAGAAGAAAACCTTTCCTCTTATGCTGTGATTTTTGATGCTGGTAGCACTGGAACTCGAGTGCACGTTTTCCATTTCGACCAGAACTTAGATCTCCTTCGCATTGGCAATAATCTTGAATTTCTCGCAAGGGTCACACCCGGTTTGAGTTCATATGCGGATCATCCTGAAAAAGCTGCCCAATCTTTGATTCCACTTTTAGAGGCAGCTGAAAATGTTGTCCCTGAGGACCTGCACCCCAAGACACCCCTTATGCTTGGCGCAACCGCAGGTTTGAGACTTTTGGAAGGGAATGCTGCTGAAAACATATTGCAAGCGGTTAGGAATTTGTTCAAGAACAGAAGTACTCTGAACCTTCAATCAGATGATGCAGTAGCTATAATTGAAGGAACCCGAGAAGGTTCTTATCTGTGGTTGGCTGTGAATTATCTACTGCGGAGGCTGGGAAAAAGGTTTTCAAAGACTGTGGGAGTGGTTGATCTTGGAGGAGGATCAGTTCAAATGGCATATGCTGTCTCAAGGAACGCAGCCAAAAATGCCCCATTACTACCTCAAGGAGAGGATCCTTACATAAAGAAGCTATATGCGAAGGGCAAAAATTACGACCTCTATGTTCACAGTTACTTGTGCTATGGTACAGAAGCATTTCGTGCAGAGGTTTTGAAGGTCACTGATGGCTCTGCTAACCCTTGCATTTTGGCTGGATACGAAGGAAGCTATACATATTCAGAAGTGGAGTATGCAGTGTACCCTCCAAAGTCAGGGCCCAGTTATGATGCATGCAGAGAGATAGTCCTTGAGGCTCTCAAGCTGAAGGCGCCATGTTCTCATCACAATTGCTCATTTGGTGGGGTATGGGACGGTGGAAGAGGAAGTGGACAAAGAAATATTTATGCTACTTCATCGTTCTATTATCTGTCCAGAGACGTTGGTATCGTTGATCCAAAATCTCCCAATGCCATTGTTCGTCCTGTGGATCTTGAAAACTTGGTTAAGGGAGCTTGTGGAAAAACATTTGAAGATGCCAAATCCAGTTATCCACTTCTTTCTGAAGAAAGAGTTCCGTTTGTGTGCATAGACATTACGTACATGTATGCGTTGCTGGTTGATGGATTTGGCCTAGATCCTGAGCAAGAGTTTACACTGGCTGATAAAATTGAATATGAAGATGCTCTTGTGGAAACAGCATGGCCTCTTGGCACAGCCATAGAAGCCATATCATCAGTGCCTAAATTTGAACGGCTTATGTATTTCATGTAA 1368 0.4335 MGFQFFFSFFLLLLPTFSSSEYLGNNLLSNRKVFLKEEENLSSYAVIFDAGSTGTRVHVFHFDQNLDLLRIGNNLEFLARVTPGLSSYADHPEKAAQSLIPLLEAAENVVPEDLHPKTPLMLGATAGLRLLEGNAAENILQAVRNLFKNRSTLNLQSDDAVAIIEGTREGSYLWLAVNYLLRRLGKRFSKTVGVVDLGGGSVQMAYAVSRNAAKNAPLLPQGEDPYIKKLYAKGKNYDLYVHSYLCYGTEAFRAEVLKVTDGSANPCILAGYEGSYTYSEVEYAVYPPKSGPSYDACREIVLEALKLKAPCSHHNCSFGGVWDGGRGSGQRNIYATSSFYYLSRDVGIVDPKSPNAIVRPVDLENLVKGACGKTFEDAKSSYPLLSEERVPFVCIDITYMYALLVDGFGLDPEQEFTLADKIEYEDALVETAWPLGTAIEAISSVPKFERLMYFM 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5180g00004 455 Pfam GDA1/CD39 (nucleoside phosphatase) family 38 447 IPR000407 GO:0016787
Vium5180g00004 455 PANTHER ADENOSINE/GUANOSINE DIPHOSPHATASE 16 445 IPR000407 GO:0016787
Vium5180g00004 455 Gene3D Exopolyphosphatase. Domain 2 165 423 - -
Vium5180g00004 455 CDD NBD_sugar-kinase_HSP70_actin 46 206 - -
Vium5180g00004 455 FunFam Apyrase 1 165 423 - -
Vium5180g00004 455 Gene3D - 44 439 - -
Vium5180g00004 455 ProSitePatterns GDA1/CD39 family of nucleoside phosphatases signature. 164 179 IPR000407 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5180g00004 Vium-Chr5180 99473 102642 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5180g00004 43 444 Calmodulin-binding Proteins AT3G04080 52.854 6.78e-144 418