Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5180g00003 ATGAATTTGGTGATTCCAAAATCAAAGAGCATCATGAGCTTCCAATCCCTCGTCATTTTTCTACTCTTCTCATCATTTCCAACACTCTCTTTTTCGCAATATGTTGGGAACACTATCTTTCTCAATCATCGTAAGATACTCCCCAAACAGGAACTCCTTACCTCTTATGCTGTCATCTTTGATGCTGGTAGCTCTGGTAGTCGTGTGCATGTCTTCCATTTTGACCAGAACTTAGATCTTATTCGCCTTGGCAATGACCTTGAGTTTACTAAAAAGATCACACCTGGTTTGAGCTCCTACGCAGATCATCCTGAAAAAGCTGCAGAATCTCTCATTCCACTTTTAGAGGACGCTGAAAGGGTTGTTCCTCAAGAACAGCACCCCAAGACACCCCTTAAACTTGGGGCAACAGCGGGTTTGAGGATCTTAGATGGCGATGCTGCTGAAAACATATTGCAAGCGGTTAGGGAAATGTTCAAGAACAGAAGTACACTTAACGTTCAACCAGATGCAGTATCTGTTATTGATGGAACCCAAGAAGGTTCTTACCTATGGGTTGCAGTTAACTATCTTTTGGAAACGTTGGGAAAGAAGGCTTCAAAAACAATGGGAGTGATAGATCTTGGAGGTGCATCAGTTCAAATGGCCTATGCTGTCACAAAAAACACAGCTAAAAATGCCCCAAAACCACCACAAGGAGAGGATCCTTACATCAAGAAACTTGTACTCAAGGGAAAGAAATATGACCTTTATGTTCACAGTTACTTGCGTTATGGTAACGATGCAGCTCGTGCTGAGATTTTCAAGGTCACTGATGGTGCTGCTAGTCCTTGCCTTTTAGTTGGTTATGAAGGTATATACAAATATTCTGGAGAAACGTACAAGATCTATGGCCCTACTTCTGCTTCCAACTTTGATGAATGCCGAGACACAGTTCTGAAGGTTCTGAGAGTGAATGAGCCATGTGCCCATCAAAATTGTACATTTGGTGGGATATGGGACGGTGGAAAAGGAAGTGGACAGAAAAACCTTGTTGTTACTTCATCTTTCTACTATAGGTCTTCAGAGGTTGGTTTTGTGAAGCCACCCAATTCCAGAAATCGTCCTGTGGAGTGGGAAATTGCAGCTAAAGAAGCTTGTAAACTATCATTTGAGGAAGCCAAATCCACTTTTCCAAATGTTGCCAAAGATAAGCTTCCATTTGTATGCCTGGATCTTGTATACCAGTATACATTGCTTGTTAATGGATTTGGGCTTGATCCTGAGCAAGAGATTACAGTGGCAGAAGGAATTGAATATCAAAATTCTATTGTGGAAACAGCATGGCCTCTAGGAACTGCCATTGAAGCCATATCATCTTTGCCTAAATTTAATCGATTAATGTATTTCATTTAA 1395 0.4122 MNLVIPKSKSIMSFQSLVIFLLFSSFPTLSFSQYVGNTIFLNHRKILPKQELLTSYAVIFDAGSSGSRVHVFHFDQNLDLIRLGNDLEFTKKITPGLSSYADHPEKAAESLIPLLEDAERVVPQEQHPKTPLKLGATAGLRILDGDAAENILQAVREMFKNRSTLNVQPDAVSVIDGTQEGSYLWVAVNYLLETLGKKASKTMGVIDLGGASVQMAYAVTKNTAKNAPKPPQGEDPYIKKLVLKGKKYDLYVHSYLRYGNDAARAEIFKVTDGAASPCLLVGYEGIYKYSGETYKIYGPTSASNFDECRDTVLKVLRVNEPCAHQNCTFGGIWDGGKGSGQKNLVVTSSFYYRSSEVGFVKPPNSRNRPVEWEIAAKEACKLSFEEAKSTFPNVAKDKLPFVCLDLVYQYTLLVNGFGLDPEQEITVAEGIEYQNSIVETAWPLGTAIEAISSLPKFNRLMYFI 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5180g00003 464 Gene3D Exopolyphosphatase. Domain 2 176 436 - -
Vium5180g00003 464 Pfam GDA1/CD39 (nucleoside phosphatase) family 54 455 IPR000407 GO:0016787
Vium5180g00003 464 Gene3D - 56 448 - -
Vium5180g00003 464 FunFam Apyrase 1 176 432 - -
Vium5180g00003 464 CDD NBD_sugar-kinase_HSP70_actin 58 217 - -
Vium5180g00003 464 PANTHER ADENOSINE/GUANOSINE DIPHOSPHATASE 15 454 IPR000407 GO:0016787
Vium5180g00003 464 ProSitePatterns GDA1/CD39 family of nucleoside phosphatases signature. 175 190 IPR000407 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5180g00003 Vium-Chr5180 62576 66601 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5180g00003 55 453 Calmodulin-binding Proteins AT3G04080 56.965 1.65e-159 458
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5180g00003 K14641 - gmx:100781628 652.899