Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5180g00002 ATGGACTTAACTCTCTTTTCACTTCTATTCTTGTTACTATTGCCTGCACTCTCTTCTTCCATATATGTTGGGAACAATATCTTTTTCAATCATCGCAAGATATTCCCCAAACAACAAGAACTTACTTCGTACGCTGTGATCTTTGATGCCGGTAGCACTGGTAGCCGTGTCCATGTCTTTCATTTCGACCAGAACTTAGATCTTCTTCACATAGGCAACGAGATTGAGTTTTATGATAAGGTGACACCTGGTTTGAGTGCATATGCGGATAATCCTGAAAATGCAGCAAAATCTCTGCTTCCACTTTTGGAAGAAGCTGAAAGTGTTGTCCCTGAGCACCTCTACCCCACCACACCTGTTAAACTTGGGGCGACTGCAGGTCTAAGGCTTTTGGATGGGGATGCTTCTGAAAGGATATTGCAAGCGGTTAGCGATTTGCTCAAGAACAGAAGTACCTTCAGCGTTCAACCAGATGCTGTAGCTATAATTGATGGAACCCAAGAAGGTTCCTATCTATGGGTGACAGTAAACTATTTACTAGGGAATTTGGGGAAGAAGTTTTCAAAGACAGTGGGAGTAGTTGATCTTGGAGGTGGATCGGTTCAAATGACATATGCTGTCTCAAAGAACACAGCAAACAATGCTCCACAACCACCAGAAGGAGAGGAACCTTACATAAAGAAACTTGTCCTCAAGGGAAAGAAATATGACCTCTATGTTCACAGTTACTTGCGCTATGGTAGAGAGGCATTTCGTGCTGAGGTTTTGAAGGTCACTGATGGTTCTGCTAACCCTTGTATTTTATATGGCTTTGATGGGACCTACACATATTCTGGAGAAGACTATAAGGCCTTTGCTCCCGTTTCTGGATCCAACTACCATGAATGCAGAAAGATAGCTCTTCAAGCTCTGAAAGTGAACCAGTTTTGCCCCCACCGAAATTGTAGTTTTGGAGGGATATGGGATGGTGGAAAGGGAAGTGGACAAAACATTCTTTTCGGCACTTCATCTTTCTATTATCTGCCTTCGGAGATTGGTATGTTTAATCCAAATAAACCCAACTCCAAGATTCATCCTTTGGATTTGAAGACTGAAGCAAAGAGAGCTTGTGAAACAACATTTGAGGATGCCAAATACACTTATCCACTTCTTTCAGCTGATAAACTTCCATATGTATGCTTGGACCTTACATACCAGTATGCATTGTTTACTGATGGATTTGGCTTAGATCCATTGCAAGAGATCACAGTGGCAAATCAAATTGAATATCAGGAAGCACTTGTGGAAGCAGCATGGCCTTTAGGCACTGCCATAGAAGCCATATCTTCATTGCCTAAATTTGATCCATTCATGTATTTTATTTAA 1365 0.4161 MDLTLFSLLFLLLLPALSSSIYVGNNIFFNHRKIFPKQQELTSYAVIFDAGSTGSRVHVFHFDQNLDLLHIGNEIEFYDKVTPGLSAYADNPENAAKSLLPLLEEAESVVPEHLYPTTPVKLGATAGLRLLDGDASERILQAVSDLLKNRSTFSVQPDAVAIIDGTQEGSYLWVTVNYLLGNLGKKFSKTVGVVDLGGGSVQMTYAVSKNTANNAPQPPEGEEPYIKKLVLKGKKYDLYVHSYLRYGREAFRAEVLKVTDGSANPCILYGFDGTYTYSGEDYKAFAPVSGSNYHECRKIALQALKVNQFCPHRNCSFGGIWDGGKGSGQNILFGTSSFYYLPSEIGMFNPNKPNSKIHPLDLKTEAKRACETTFEDAKYTYPLLSADKLPYVCLDLTYQYALFTDGFGLDPLQEITVANQIEYQEALVEAAWPLGTAIEAISSLPKFDPFMYFI 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5180g00002 454 Pfam GDA1/CD39 (nucleoside phosphatase) family 39 444 IPR000407 GO:0016787
Vium5180g00002 454 Gene3D Exopolyphosphatase. Domain 2 164 422 - -
Vium5180g00002 454 FunFam Ectonucleoside triphosphate diphosphohydrolase 5 44 173 - -
Vium5180g00002 454 CDD NBD_sugar-kinase_HSP70_actin 46 205 - -
Vium5180g00002 454 FunFam Apyrase 1 164 422 - -
Vium5180g00002 454 ProSitePatterns GDA1/CD39 family of nucleoside phosphatases signature. 163 178 IPR000407 GO:0016787
Vium5180g00002 454 Gene3D - 44 438 - -
Vium5180g00002 454 PANTHER ADENOSINE/GUANOSINE DIPHOSPHATASE 8 444 IPR000407 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5180g00002 Vium-Chr5180 56865 60251 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5180g00002 14 443 Calmodulin-binding Proteins AT3G04080 53.132 1.81e-156 450
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5180g00002 K14641 - gmx:100781628 759.599