Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5180g00001 ATGGGAAGCCCTCAATCCAATTTGCCACCTGGTTTTAGGTTCCACCCAACAGATGAAGAACTCATTCTTCACTACCTTAGTAAAAGGGTTGCATCCATTCCCTTACCCGTTTCCATCATTGCTGAGGTTGATATCTACAAGTTAGATCCATGGGACTTGCCAGCAAAGGCAACCTTTGGGGAGAAAGAATGGTACTTTTTCAGTCCCAGAGACCGGAAGTACCCAAACGGTGCAAGGCCAAACAGGGCAGCTGCTTCAGGGTATTGGAAGGCCACTGGCACAGATAAGACCATAGTCACATCATTGCAGGGTGGATCAGTCCAAGAGAACATTGGTGTGAAGAAGGCTTTGGTGTTCTACAAAGGAAGACCCCCAAAGGGTGTCAAGACCAATTGGATCATGCATGAATATCGCCTTGTAGACAACAACAAACCCATTAAGCTCAATGACTCCTCCATGAGATTGGATGATTGGGTGCTGTGTCGGATTTACAAGAAGTCCAAACATGCTCTAACTTCAACAGAGGCAGGAATAGGAGTTGGTGAGGTGGATCAAGCAGAGGAGCAGCAATTCAATGAGACCCTTTTGCCAATCTTAAAATCTCCAATACCTCCTCCTCAGAACACATTGATGTCTCAAAAATCTGTCTCCTTCTCCAACCTGTTGGATGCCATGGACTACTCTGTACTCAGCAGTTTCTTATCTGAGAACCATTCCAACCCACCAGAGATCGGATCAAGTGCAGGCTTCGACACTGAGAATTTGGAACAGCAATCTTCTCCGATGAACAACCCCAACAATAGCTACACGTTTCAGAAGAACACCCAATTGAACCCTTCACTCTCCAACATGGAAAACATGAGGCCAAAGCGCCAATTTTCAAGCATTGATGATGAAACTCTGTACCCATCCAAGAAATACCTGACTTCCTCTTGCAACTTTCCTTCCAACATCAACCCCCAATACGAGAATCCACAATGGAACTACCTCGTCAAACAGTCTTTGCTGAATCAGCGGTTACTGCTTGGTCCTCAGCTTCAATTTCAAGGATAA 1053 0.4549 MGSPQSNLPPGFRFHPTDEELILHYLSKRVASIPLPVSIIAEVDIYKLDPWDLPAKATFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKTIVTSLQGGSVQENIGVKKALVFYKGRPPKGVKTNWIMHEYRLVDNNKPIKLNDSSMRLDDWVLCRIYKKSKHALTSTEAGIGVGEVDQAEEQQFNETLLPILKSPIPPPQNTLMSQKSVSFSNLLDAMDYSVLSSFLSENHSNPPEIGSSAGFDTENLEQQSSPMNNPNNSYTFQKNTQLNPSLSNMENMRPKRQFSSIDDETLYPSKKYLTSSCNFPSNINPQYENPQWNYLVKQSLLNQRLLLGPQLQFQG 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5180g00001 350 Pfam No apical meristem (NAM) protein 9 139 IPR003441 GO:0003677|GO:0006355
Vium5180g00001 350 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 7 272 - -
Vium5180g00001 350 FunFam NAC transcription factor 56 17 171 - -
Vium5180g00001 350 Gene3D NAC domain 17 171 IPR036093 GO:0003677|GO:0006355
Vium5180g00001 350 MobiDBLite consensus disorder prediction 237 265 - -
Vium5180g00001 350 ProSiteProfiles NAC domain profile. 8 166 IPR003441 GO:0003677|GO:0006355
Vium5180g00001 350 SUPERFAMILY NAC domain 4 166 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5180g00001 Vium-Chr5180 17196 19119 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5180g00001 4 350 NAC Transcription Factor Family AT3G04070 52.222 2.20e-110 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vium5180g00001 NAM 1.5e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5180g00001 - - vun:114194335 684.871