Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5179g00005 ATGTCCCTCGAAGACTCCCTAAGATCTCTCTCTCTCGACTACCTCAATCTTCTCATCAATGGCCAAGCCTTCAGCGACGTCACTTTCCAAGTCGAGGGTCGTCTCGTCCACGCCCACCGCTGCATCTTGGCCGCGCGCAGCCTCTTCTTCCGCAAATTCTTCTGCGGCCCCGACCCTCCACCCGGCCTCGACCCCGCCGCCGCTTCTCGAGCCGGCGCCGCCTCCGCTGCGCGTCCCCCCGGCGTGATCCCGGTGAACTCGGTTGGGTACGAGGTTTTCCTGCTGCTGCTGCAGTTCCTGTACAGTGGACAAGTCTCCATCGTGCCGCAGAAGCACGAGGCCAGACCCAATTGCGGCGAGCGAGGGTGCTGGCACACGCATTGCACCTCCGCCGTTGATCTCGCCCTCGACACCCTCGCCGCCGCCAGATACTTCGGCGTTGAACAACTTGCATTGCTCACTCAGAAACAACTTGCGAGCATGGTGGAGAAAGCTTCAATCGACGATGTGATGAAAGTGTTGATAGCATCTCGAAAGCAGGAAATGCAGCAGCTGTGGAGCACGTGCTCCCACCTGGTGGCAAAGTCAGGACTTCCGCCGGAGGTGCTAGCCAAGCACCTCCCCATCGACGTGGTGGCCAAGATCGAGGAGCTCCGCCTCAAATCCTCCCTAGCGCGCCGCTCCATGCTGCCGCTCCGCCACCCGCACCCCGACCTCGGGGCCGCCGACATGGAGGATCAGAAAATCCGGCGGATGCGGCGCGCACTCGACTCCTCCGACGTGGAACTAGTTAAACTCATGGTGATGGGGGAGGGCCTGAACCTGGACGAGGCGCTGGCGTTGCACTACGCCGTGGAGAGTTGCAGCAGGGAGGTGGTGAAGGCGCTGCTGGAGCTGGGCGCGGCGGACGTGAATTTCCCGGCCGGGCCGGCCGGGAAGACTCCTCTTCACGTGGCGGCGGAGATGGTATCCCCAGAGATGGTGGCGGTGTTGCTGGATCACCACGCTGACCCGAACGTGCGAACCGTGGATGGCGTGACCCCGTTGGACATCCTGAGAACCCTAACATCGGACTTCCTCTTCAAAGGGGCGGTCCCCGGACTGACCCACATTGAACCCAACAAGCTGAGGCTCTGCTTGGAGCTGGTGCAATCTGCAGCTCTCGTTTTGTCTCGTGAAGAAGGGAACAACCACAACAACAACGCTAACAACAGCAGCAACGACAACACTAACAACCCCAACACTTCTGCTTCTGCAACTGCAATCTATCCACCAATGAGTGAAGCGCACACCAGCAGCAATTTGGACTCGAGACTGGTGTATCTCAACCTCGGCGCCACGCCACAAATAGGTGACGATGATAGCAGCAGCCAGAGGGAAGCCATGAACCGTCATGGCTCGCAAGGTGGTGGATGTGACCCATCAATGCTTTTCAAATGGTAG 1443 0.5988 MSLEDSLRSLSLDYLNLLINGQAFSDVTFQVEGRLVHAHRCILAARSLFFRKFFCGPDPPPGLDPAAASRAGAASAARPPGVIPVNSVGYEVFLLLLQFLYSGQVSIVPQKHEARPNCGERGCWHTHCTSAVDLALDTLAAARYFGVEQLALLTQKQLASMVEKASIDDVMKVLIASRKQEMQQLWSTCSHLVAKSGLPPEVLAKHLPIDVVAKIEELRLKSSLARRSMLPLRHPHPDLGAADMEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDEALALHYAVESCSREVVKALLELGAADVNFPAGPAGKTPLHVAAEMVSPEMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEGNNHNNNANNSSNDNTNNPNTSASATAIYPPMSEAHTSSNLDSRLVYLNLGATPQIGDDDSSSQREAMNRHGSQGGGCDPSMLFKW 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5179g00005 480 Gene3D Potassium Channel Kv1.1; Chain A 4 195 IPR011333 -
Vium5179g00005 480 PANTHER BTB/POZ DOMAIN AND ANKYRIN REPEAT-CONTAINING PROTEIN NH5.2 1 475 IPR044284 GO:0099402
Vium5179g00005 480 MobiDBLite consensus disorder prediction 449 464 - -
Vium5179g00005 480 FunFam regulatory protein NPR5 isoform X2 242 359 - -
Vium5179g00005 480 SMART BTB_4 25 162 IPR000210 GO:0005515
Vium5179g00005 480 ProSiteProfiles Ankyrin repeat profile. 311 343 IPR002110 GO:0005515
Vium5179g00005 480 ProSiteProfiles Ankyrin repeat region circular profile. 311 341 - -
Vium5179g00005 480 Pfam BTB/POZ domain 16 111 IPR000210 GO:0005515
Vium5179g00005 480 Pfam Ankyrin repeats (3 copies) 259 341 IPR002110 GO:0005515
Vium5179g00005 480 Pfam Domain of unknown function (DUF3420) 197 253 IPR024228 -
Vium5179g00005 480 SMART ANK_2a 311 340 IPR002110 GO:0005515
Vium5179g00005 480 SMART ANK_2a 276 306 IPR002110 GO:0005515
Vium5179g00005 480 MobiDBLite consensus disorder prediction 449 480 - -
Vium5179g00005 480 SUPERFAMILY POZ domain 8 160 IPR011333 -
Vium5179g00005 480 MobiDBLite consensus disorder prediction 395 420 - -
Vium5179g00005 480 CDD BTB_POZ_NPR_plant 8 162 - -
Vium5179g00005 480 SUPERFAMILY Ankyrin repeat 270 354 IPR036770 -
Vium5179g00005 480 FunFam regulatory protein NPR5 isoform X1 4 195 - -
Vium5179g00005 480 ProSiteProfiles BTB domain profile. 25 109 IPR000210 GO:0005515
Vium5179g00005 480 Gene3D - 243 359 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5179g00005 Vium-Chr5179 43474 48325 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Vium5179g00005 BTB 5.3e-15 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5179g00005 K14508 - gmx:100811388 753.436