Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5174g00003 ATGGCAAACCCAAACCCTCTTCAACTTTCTGCTCTCAATCAAATAAAACTGCATCTTCTCGGAGAACTCTCTCCTCTTCCGATCACACCCTCTTCTGATCTCACCAAAAATAACTTCTCTTTTCTATTTGAGGAACCAAATCCCACCTCATCTCAATCTAGCTCCCTCTGTTCCCAATCTTCAACTTCTCAATCATCTGCAACAATGGACCAATTTTTCTCTGACTTTTTCGACTTCCCAACTACTTCCACGGAACACCAGTTCTCTCGTTTCGAAATCGAGTCCAAACCCCAAATAATCGATCTCCAGACTCCGAATCCACACCCTCAAACATCAACCTCGGATTTCACGTTTCCGAACACACATGACCGCAAGAAACCTCAATCAAATCGAAAAAAGTCGCTGCAAATCTCTCTCCCGCAAAAGACGGAGTGGATCCAGTTCGGAGAGGGTGAGGTTGCGGGAAAGGTGGTGCAGCAGGCTGCAGAAGAGAAAAAGCACTACAGAGGAGTTCGACAGAGACCGTGGGGGAAGTTCGCGGCGGAGATCCGCGACCCCAACAAGCGTGGCTCCAGGGTGTGGCTGGGGACGTTCGAAACGGCTCTGGAAGCCGCCAAAGCCTACGACCGAGCCGCGTTCAGGTTTCGCGGCTCCAAAGCCATCCTCAACTTTCCCCTCGAAGCCGGCGCCGATAACCGAAAACGCCAAAGGGAAGAGGAAGAGCCGGTGGTGGAAGTCGTTAAGAGGGAAAAGGTAGAAGATTTCGACGTCACCTGTATTAGGGATGCTCCCTTAACGCCGTCTAGCTGGCCAGGCTTCTGGGGTTCCGATGCTAACGGAATCTTCGCCGTGCCGCCTCTGTCGCCGCTATCTCCTCATCCGGCGTTGGGTTATCCACAGCTTATGGTTGTGTGA 915 0.5158 MANPNPLQLSALNQIKLHLLGELSPLPITPSSDLTKNNFSFLFEEPNPTSSQSSSLCSQSSTSQSSATMDQFFSDFFDFPTTSTEHQFSRFEIESKPQIIDLQTPNPHPQTSTSDFTFPNTHDRKKPQSNRKKSLQISLPQKTEWIQFGEGEVAGKVVQQAAEEKKHYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFETALEAAKAYDRAAFRFRGSKAILNFPLEAGADNRKRQREEEEPVVEVVKREKVEDFDVTCIRDAPLTPSSWPGFWGSDANGIFAVPPLSPLSPHPALGYPQLMVV 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5174g00003 304 SMART rav1_2 167 231 IPR001471 GO:0003700|GO:0006355
Vium5174g00003 304 PANTHER DNA-BINDING DOMAIN 112 236 IPR044808 GO:0003700|GO:0009873
Vium5174g00003 304 Gene3D AP2/ERF domain 166 227 IPR036955 GO:0003700|GO:0006355
Vium5174g00003 304 MobiDBLite consensus disorder prediction 101 136 - -
Vium5174g00003 304 FunFam Ethylene-responsive transcription factor 2 166 227 - -
Vium5174g00003 304 Pfam AP2 domain 167 217 IPR001471 GO:0003700|GO:0006355
Vium5174g00003 304 SUPERFAMILY DNA-binding domain 167 226 IPR016177 GO:0003677
Vium5174g00003 304 ProSiteProfiles AP2/ERF domain profile. 167 225 IPR001471 GO:0003700|GO:0006355
Vium5174g00003 304 CDD AP2 166 225 IPR001471 GO:0003700|GO:0006355
Vium5174g00003 304 PRINTS Ethylene responsive element binding protein signature 207 227 IPR001471 GO:0003700|GO:0006355
Vium5174g00003 304 PRINTS Ethylene responsive element binding protein signature 168 179 IPR001471 GO:0003700|GO:0006355
Vium5174g00003 304 MobiDBLite consensus disorder prediction 101 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5174g00003 Vium-Chr5174 22146 23270 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5174g00003 1 304 AP2-EREBP Transcription Factor Family AT4G17490 44.444 2.01e-66 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium5174g00003 AP2 2.6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5174g00003 K09286 - gmx:100808173 362.073