Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5167g00003 ATGGATAATTCTGTTTCAGAGAACAGTTTTATCATCGAGAGTGATGAAGAGGATATGGAGAAGGATTTGAACAAAGGTGGAGGTGATGGTAACGATTCTGATTCTTCTAGTTACTCAACTGAAAACCCTCCACAGAGAAAGCCCAGTTCTTACAACATCTCGTGGCCACAGAGTTACAGGCAATCTATTGATCTATACAGTAGTGTGCCATCACCAAACATTGGATTTTTGGGCACCTCCTCATTGTCAAGACTAAGCAGTTCTTTCCTTTCTACATCACTAACAAGGAGGCACACTCCTGAAGCACTTCCTTCAGTGACAAAGCCTCTTTTACAAGAACCAGAAGATGAGCAGCATCAGAGACGTAGCTCTCACACCTTGCTTCCTCCTCTTCCTTCTAGAAGATCTTCTTTGATTAAGAAGGACTCCAAGGTTTCTCATGAAGTTCCCTCTCATCACTGCTCTTTTGGACAAGCTGTGTTCAATGGCATAAACATTCTTTGTGGTGTTGGAATCCTTTCTACCCCTTATGCTGCCAAAGAAGGTGGATGGTTTGGGATCTCAGTCTTGTTTCTTTTTGCAATTATTTCATTTTATACTGGGCTGCTCTTGCGTTCCTGTTTGGACAGTGATCCTGAGCTTGAAACATACCCTGATATTGGCCAAGCTGCTTTTGGTACTACTGGACGTATTGCAATTTCAATAGTGTTGTACGTGGAATTATATGCTTGTTGCATTGAATATATAATTTTGGAGGGCGACAACTTGTCTTCCTTGTTTCCAAATGCACGCTTGAATTTGGGTGCAATTGAAATGGATTCACATATACTTTTTGCGGTGCTAACTGCCTTGACTGTTCTTCCTACTGTTTGGCTCCGTGATCTAAGAATTCTCAGTTACATATCTGCTGGTGGAGTTATTGCATCCATTTTGGTGGTTCTCTGCTTGTTATGGGTTGGAGTAGACAATGTAGGATTTCATAGCAAAGGGACAACACTCAATCTTGCAACTTTTCCTGTTGCTGTGGGTCTCTATGGTTACTGCTACTCTGGACATGCTGTTTTCCCGAACATTTATTCATCCATGGCAAATAAAAACCAATTCCCTGGAGTGCTCTTAGCATGTTTTGGTATTTGTAGCTTATTGTATGCTGGAGCTGCTGTTATGGGATACACAATGTTTGGTGAAGCTATACTCTCTCAATTCACTCTCAACCTGCCCCAAGAATTGGTAGCAACCAAGATTGCTGTTTGGACCACGGTGGTTAATCCATTAACCAAATTTGCATTGACTATATCTCCGGTGGCAATGAGTCTAGAGGAGTTGTTACCATCAAACCATGCCAAATCTTTTCTATATTGCTTCTTCATCAGAACAGGGTTGGTACTTTCCACCCTCGTTATTGGTCTCTCAGTTCCCTTTTTTGGTCTGGTTATGTCGTTGATTGGATCATTATTCACAATGCTTGTTTCTTTGATACTACCCTGCGTTTGTTTCCTGAAAATCTTGCGAGGCAAAGTGACACGATTGCAGGCAGCAGTTTGCGTTACAATCATCACAGTAGGAGTTGTCTGTTCTGCTTTTGGAACATACTCTGCCCTCTCCGAGATTATTAAGAGTTTGAGGGGATGA 1632 0.4185 MDNSVSENSFIIESDEEDMEKDLNKGGGDGNDSDSSSYSTENPPQRKPSSYNISWPQSYRQSIDLYSSVPSPNIGFLGTSSLSRLSSSFLSTSLTRRHTPEALPSVTKPLLQEPEDEQHQRRSSHTLLPPLPSRRSSLIKKDSKVSHEVPSHHCSFGQAVFNGINILCGVGILSTPYAAKEGGWFGISVLFLFAIISFYTGLLLRSCLDSDPELETYPDIGQAAFGTTGRIAISIVLYVELYACCIEYIILEGDNLSSLFPNARLNLGAIEMDSHILFAVLTALTVLPTVWLRDLRILSYISAGGVIASILVVLCLLWVGVDNVGFHSKGTTLNLATFPVAVGLYGYCYSGHAVFPNIYSSMANKNQFPGVLLACFGICSLLYAGAAVMGYTMFGEAILSQFTLNLPQELVATKIAVWTTVVNPLTKFALTISPVAMSLEELLPSNHAKSFLYCFFIRTGLVLSTLVIGLSVPFFGLVMSLIGSLFTMLVSLILPCVCFLKILRGKVTRLQAAVCVTIITVGVVCSAFGTYSALSEIIKSLRG 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5167g00003 543 PANTHER OS05G0424000 PROTEIN-RELATED 161 521 - -
Vium5167g00003 543 MobiDBLite consensus disorder prediction 1 53 - -
Vium5167g00003 543 MobiDBLite consensus disorder prediction 29 53 - -
Vium5167g00003 543 Pfam Transmembrane amino acid transporter protein 154 533 IPR013057 -
Vium5167g00003 543 MobiDBLite consensus disorder prediction 100 135 - -
Vium5167g00003 543 FunFam Amino acid transporter AVT1A 152 540 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5167g00003 Vium-Chr5167 15426 22599 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5167g00003 1 490 Amino Acid or Auxin Permease AAAP Family AT2G39130 68.072 0.0 684
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5167g00003 K15015 - gmx:100775840 912.909