Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5166g00002 ATGGCAGGTCAAGCGTTTGCAACTGAGAACTTCAATCCAAATGATACCAAGGGAAAGACCATCACTTGCAAAGCTGCTGTGGCATATGGTCCTGGAGAACCCTTTGTGGTCGAACGTGTTCTTGTTCATCCTCCTCAGAAAATGGAGGTTCGAATCAAGATCCTCTTCACTTCAATCTGTCATACTGATCTCAGTGCTTGGAAAGGCGAGAACGAGGCTGCACGATTTTATCCTCGAATTTTCGGGCACGAAGCTTCTGGGATTGTGGAGAGTGTGGGAGAAGGTGTGACTGAGATGAAAGAAGGAGATTTGGTGGTACCAATATTCAATGGGGAATGTGGGGATTGCAAATACTGCAAGAGTGAGAAGACCAACAAGTGTGAGAGATTTGGCGTGAGTATTATGAAGAAGGAGATGGATTGTGGTGGCACAAGGTTTTCTACAATGGATAGAAAACCCATCTTCCATTTTTTGAACACTTCAACTTTCACAGAGTACACAGTGCTGGATTCAGCATGCGTCGTCAAGATTCACGCTAATGGCGATTGGAACTTCAACCCCTTCATCAAAACACTCACATTGCTTAGTTGTGGTGTCTCTACGGGTGTGGGAGCTGCTTGGAACACAGCAAATGTACATTCTGGTTCAACTGTAGCTGTCTTTGGTTTAGGCGCTGTGGGTCTTGCTGTTGCAGAGGGTGCACGAGCCAGAGGTGCATCCAAAATAATAGGAGTGGATATCAACCCTGAGAAATTCATCAAAGGCCGTGCGATGGGCATCACTGACTTCATCAATCCCAGGGAAGATGAGAAGCCAGTATATGAGAGGATCAGAGACATGACTGATGGGGGCGTGCACTATAGTTTTGAATGTGCTGGAAATTTGAATGTTCTAAGGGATGCCTTCTTGTCAGCTCATGAGGGTTGGGGGTTGACTGTGGTATTAGGGGTTCATACATCACCACAACTGCTTCCAATCCACCCAATGGATCTGTTCGAGGGTCGGAGAATTGTAGGATCGGTTTTTGGAGGCTTCAAAGGGAAGACTCAGTTACCACATTTTGCCAAAGAATGCATGGATGGAGTGGTGAAATTAGATGGTTTTATCACTCATGAGCTTCCACTGGAGGAGATAAACGAGGCCTTTGATCTTTTGATTGCCGGAAAGTCTCTAAGATGTCTTCTACGCTTCTAA 1194 0.4573 MAGQAFATENFNPNDTKGKTITCKAAVAYGPGEPFVVERVLVHPPQKMEVRIKILFTSICHTDLSAWKGENEAARFYPRIFGHEASGIVESVGEGVTEMKEGDLVVPIFNGECGDCKYCKSEKTNKCERFGVSIMKKEMDCGGTRFSTMDRKPIFHFLNTSTFTEYTVLDSACVVKIHANGDWNFNPFIKTLTLLSCGVSTGVGAAWNTANVHSGSTVAVFGLGAVGLAVAEGARARGASKIIGVDINPEKFIKGRAMGITDFINPREDEKPVYERIRDMTDGGVHYSFECAGNLNVLRDAFLSAHEGWGLTVVLGVHTSPQLLPIHPMDLFEGRRIVGSVFGGFKGKTQLPHFAKECMDGVVKLDGFITHELPLEEINEAFDLLIAGKSLRCLLRF 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5166g00002 397 FunFam S-(hydroxymethyl)glutathione dehydrogenase 202 340 - -
Vium5166g00002 397 Pfam Alcohol dehydrogenase GroES-like domain 49 146 IPR013154 -
Vium5166g00002 397 Pfam Zinc-binding dehydrogenase 225 345 IPR013149 -
Vium5166g00002 397 Gene3D - 202 340 - -
Vium5166g00002 397 SUPERFAMILY GroES-like 16 221 IPR011032 -
Vium5166g00002 397 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 82 96 IPR002328 GO:0008270|GO:0016491
Vium5166g00002 397 PANTHER ALCOHOL DEHYDROGENASE 18 394 - -
Vium5166g00002 397 SUPERFAMILY GroES-like 347 397 IPR011032 -
Vium5166g00002 397 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 193 361 IPR036291 -
Vium5166g00002 397 Gene3D - 26 392 - -
Vium5166g00002 397 FunFam Alcohol dehydrogenase 6 26 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5166g00002 Vium-Chr5166 39904 56908 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5166g00002 49 386 Monolignol Biosynthesis Gene Families AT2G21890 25.496 2.59e-14 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5166g00002 K00001 - gmx:100787307 678.322