Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5166g00001 ATGCGAAAGTCCTTCAAGGATTCCCTCAAAGCTCTTGAAGCCGACATTCTCTTTGCCAATACTCTTGCTTCTGATTATCCAAGAGAAAGTGATGGAGCCTGCTTACAGATGAGATTGTCTTATAGTCCAGCTGCTCAATTCTTTCTTTTTCTGGTTCAGTGGACTGACTGTCATCTTGCTGGAGCCTTGGGATTGCTTAGAGTTCTCATATACAAGGTATATGAGGATGGGAAGACAACCATGTCCATTTATGAGAGAAAAACCAGTCTGAAGGATTTCTATGGTGTGATCTTTCCCTCTTTACTTCAACTCCACAGAGGAGTCACTGATGTAGAAGAAAGAAAACAGAAAGATTTATTTGCTAAAAAGTACATGCACAAAGATATAGTAAGAAAAGGAAAACTATCTGAAATTGATATTGAGAGAGAAGAAGAATGCGGTATTTGCATGGAGATGAACAACAAGGTTGTCTTGCCCAATTGCAACCACACTTTGTGTATGAAATGCTTCAGGGACTGGCATTCAAGATCTCAATCTTGCCCTTTCTGTCGGGATAGTCTTCAAAGAGTAAATTCTGGTGACCTTTGGATCTACTTGAACAGCAATGAAATAAATGACTTGGCTTCAATCAACAAGGAAAATCTAAAAAGACTATTTGCATATGTTGACAAGTTGCCTCTGATTGTGTCAGATCCTTCGCTAATGTCTTATCCTCAGCGCTAA 723 0.3942 MRKSFKDSLKALEADILFANTLASDYPRESDGACLQMRLSYSPAAQFFLFLVQWTDCHLAGALGLLRVLIYKVYEDGKTTMSIYERKTSLKDFYGVIFPSLLQLHRGVTDVEERKQKDLFAKKYMHKDIVRKGKLSEIDIEREEECGICMEMNNKVVLPNCNHTLCMKCFRDWHSRSQSCPFCRDSLQRVNSGDLWIYLNSNEINDLASINKENLKRLFAYVDKLPLIVSDPSLMSYPQR 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5166g00001 240 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 124 215 IPR013083 -
Vium5166g00001 240 Pfam Zinc finger, C3HC4 type (RING finger) 143 190 - -
Vium5166g00001 240 FunFam RING/U-box superfamily protein 127 193 - -
Vium5166g00001 240 SMART ring_2 146 183 IPR001841 -
Vium5166g00001 240 PANTHER RING FINGER PROTEIN 41, 151 3 236 - -
Vium5166g00001 240 SUPERFAMILY RING/U-box 134 189 - -
Vium5166g00001 240 ProSiteProfiles Zinc finger RING-type profile. 146 184 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5166g00001 Vium-Chr5166 1633 6019 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5166g00001 94 184 C3H Transcription Factor Family AT5G01960 31.250 3.04e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5166g00001 K25840 - pop:7466068 403.675