Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5162g00023 ATGGCTTCCAAGCTCTGCGACTCATGCAAGTCCGCCACCGCCACCTTGTACTGCCGCCCCGACGCTGCCTTCCTATGCGGTGCCTGCGATTCCAAGGTCCACGCCGCCAACAAGCTCGCCTCGCGCCACCCACGCGTTGCGCTCTGCGAGGTATGCGAGCAGGCGCCCGCGCACGTCACCTGCAAGGCCGACGCCGCCGCGCTCTGCCTCGCCTGCGACCGTGACATCCACTCCGCCAACCCCCTCGCCAGCCGCCACGAGCGTCTCCCTGTCGCGCCCTTCTACGAGTCCGTACACTCCGTCAAGGCCTCCTCGCCTATCAACTTTCTCGACGACCACCGCTTCTTCTCCGACGCCGACGCTGATGTCAGCACCGAGGAGGCCGAGGCCGCGTCCTGGTTGCTACCTAATCCTAAAACAGATCTAAATTCCTCTCAGTACTTGTTCTCCGAATCCGAGCCCGTTCCTTACATAGATCTGGACTATGCCGTCGCGGATCCGAAAGCGGATCCGAAAGGCTCCGCTACCGCCGACGGCGTGGTTCCGGTGCAGAGCAACTACGAGCCGTTCGCCTACGGTTACAAATACAATTCCACCACTCTCTCGCAGTCACAGTCTCAGATGAGCCAAAGTGTATCGTCGTCGTCGATGGAGGTTGGAGTTGTGCCGGACGGAAACACGATGTCGGAGATATCGAACTGCAGCTACAGCAAGGTGGCCGCGGTGACAGTGACGGCTCAGTTTTCGGCGGCGGACAGGGAGGCAAGAGTGTTGAGGTACCGGGAGAAAAGGAAGAACCGAAAGTTCGAGAAGACAATTCGTTACGCTTCGAGAAAAGCGTATGCAGAAACGAGACCAAGGATCAAAGGCAGGTTCGCTAAACGTTCTGATGCGGACCCTCTGGCTGGATACGGCGTCGTTCCGTCGTGCTGA 933 0.597 MASKLCDSCKSATATLYCRPDAAFLCGACDSKVHAANKLASRHPRVALCEVCEQAPAHVTCKADAAALCLACDRDIHSANPLASRHERLPVAPFYESVHSVKASSPINFLDDHRFFSDADADVSTEEAEAASWLLPNPKTDLNSSQYLFSESEPVPYIDLDYAVADPKADPKGSATADGVVPVQSNYEPFAYGYKYNSTTLSQSQSQMSQSVSSSSMEVGVVPDGNTMSEISNCSYSKVAAVTVTAQFSAADREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRSDADPLAGYGVVPSC 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5162g00023 310 Pfam B-box zinc finger 4 46 IPR000315 GO:0008270
Vium5162g00023 310 Pfam B-box zinc finger 47 91 IPR000315 GO:0008270
Vium5162g00023 310 CDD Bbox1_BBX-like 5 48 - -
Vium5162g00023 310 SMART bboxneu5 49 91 IPR000315 GO:0008270
Vium5162g00023 310 SMART bboxneu5 1 48 IPR000315 GO:0008270
Vium5162g00023 310 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 6 298 IPR045281 GO:0009909
Vium5162g00023 310 ProSiteProfiles Zinc finger B-box type profile. 1 48 IPR000315 GO:0008270
Vium5162g00023 310 Pfam CCT motif 253 295 IPR010402 GO:0005515
Vium5162g00023 310 ProSiteProfiles Zinc finger B-box type profile. 44 91 IPR000315 GO:0008270
Vium5162g00023 310 ProSiteProfiles CCT domain profile. 253 295 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5162g00023 Vium-Chr5162 139984 141361 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5162g00023 1 309 C2C2-CO-like Transcription Factor Family AT5G24930 53.050 4.00e-109 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Vium5162g00023 zf-B_box 1.1e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5162g00023 - - gmx:100794431 559.296