Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5162g00022 ATGAGCTTTCTCAATTCAATTTTATCTGCTCCAACCCAGGTTCAAAATTCCCAGGATGCAATTGTGAGCGGTGGGGGTCTAAGTCATAATGGAAAATTCAGCTATGGGTATGCTAGCTCTCCCGGCAAGAGATCTTCAATGGAAGATTTTTACGACACAAGAATTGATGGTGTTAATGGTGAAATCGTTGGCCTTTTCGGAGTTTTTGATGGTCATGGTGGTGCTCGTGCTGCTGAGTATGTCAAGAAAAACTTGTTTAGTAATTTGATCAGTCACCCAAAATTCATTTCTGACACCAAATCAGCAATATCTGATGCATATAATCATACCGATTCTGAGTTTCTGAAGTCAGAAAAGAACCAAAATAAAGATGCTGGTTCAACTGCTTCCACTGCGATTTTAGTTGGTGATCGCTTGCTTGTTGCAAATGTTGGGGATTCCAGAGCTGTCATATGCAGGGGTGGTAATGCTATTGCTGTTTCTCGAGACCACAAACCGGACCAAACTGATGAGAGGCAGAGGATTGAAGAGGCTGGAGGATTTGTTATGTGGGCTGGAACTTGGAGAGTTGGAGGTGTTCTTGCTGTTTCTCGAGCATTTGGTGATAGACTCTTAAAGCAATATGTTGTTGCTGATCCAGAAATTCAGGAAGAAAAAGTTGACAAGTCCCTTGAGTTTCTTATCCTAGCTAGTGATGGACTATGGGATGTTGTCACAAATGAGGAAGCAGTTACTATGATTAAACCAATTGAGGATGCTGAAGAAGCAGCAAAGAAGTTGATGCAAGAAGCATATGGGAGAGGTAGTGCTGACAATATCACATGTGTTGTGGTTCGCTTCTTGACTAACCATGGCACTTCTTCTCATGGTAATTCTGGAGTTAACCATGGCACTTCTTCTCATGGTAATTCTGGAGGTAACCATGGCACTTCTTCTCATGGTAATTCTGGAGGTAACCATGGCACTTCTCATGGTAGTTCTGGAGGTAACCATGGCACTTCTCTTGGTAGTTCTGGAGATAACCGTGGCACTTCTTCTCATGGTAATTCTGGAGGTAACCATGGTAGTTCTGGAGGTAACCATGGTACTTCCCATGGTACTTCTGGAGGTAACCATGGAACTTCTCATGGTAGTTCCGTAGGTAATCATGGCACTTCCCATGGTGATTCTGGACATAACCAGGGCATTTCTCATGGTAGTTCTGGAGGTAACCAAAGCATTTCTCATGGTAATTCTGGAGGTAACCAAGGCATTTCTCATGGTAGTTCTGGAGGTAACCAAGGCATTTCTCATGGTAGTTCTGGAGGTAACCAGGGCATTTCTCATGGTGGTTCTGGAGGTAACCATGGCAATTCTTCTCATAGTAGTTCTGGAGGTAACCAAGGCATTTCTCATGGTGGTTCTGGAGGTACTCATGGCACTTCTTCTCATGGTAGTTCTGGAGGTAACCATGGCACTTCACATGGTAGTTCTGGTGGTAACAATGGCATTTCTCATGGTGGTTCTGGAGGTAACCGTGGCACTTCTTCTATTGGTAGTTCTGGAGGTAACCATGACACTTCTTCCCATGGTAATTCTGGAGGTAACCATGGCATTTCTCAGGGTGGTTTTGGAGGTAACCAGGGCACTTCTTCTCATGGTAATTCTGGAGGTAACCATGGCACTTCTCATGGTAGTTCTGGAGGTAACCATGGCACTTCTCATGGTAGTTCTGGAGGTAACCTTGGCATTTCTCATGGTGGCTCTGGAGGTAACCATGGCACTTCTTCTCATGGTAGTTCTGGAGGTAATCAAGGGCCTTCTTCTCATGGTAGTTCTGGAGGTAATCAAGGCCCTTCTTCTCATGGTAGTTCTGGAGGTGCTAATAAGAACCCTCCGAAAGCTGGTTATAAGTGA 1896 0.4441 MSFLNSILSAPTQVQNSQDAIVSGGGLSHNGKFSYGYASSPGKRSSMEDFYDTRIDGVNGEIVGLFGVFDGHGGARAAEYVKKNLFSNLISHPKFISDTKSAISDAYNHTDSEFLKSEKNQNKDAGSTASTAILVGDRLLVANVGDSRAVICRGGNAIAVSRDHKPDQTDERQRIEEAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEKVDKSLEFLILASDGLWDVVTNEEAVTMIKPIEDAEEAAKKLMQEAYGRGSADNITCVVVRFLTNHGTSSHGNSGVNHGTSSHGNSGGNHGTSSHGNSGGNHGTSHGSSGGNHGTSLGSSGDNRGTSSHGNSGGNHGSSGGNHGTSHGTSGGNHGTSHGSSVGNHGTSHGDSGHNQGISHGSSGGNQSISHGNSGGNQGISHGSSGGNQGISHGSSGGNQGISHGGSGGNHGNSSHSSSGGNQGISHGGSGGTHGTSSHGSSGGNHGTSHGSSGGNNGISHGGSGGNRGTSSIGSSGGNHDTSSHGNSGGNHGISQGGFGGNQGTSSHGNSGGNHGTSHGSSGGNHGTSHGSSGGNLGISHGGSGGNHGTSSHGSSGGNQGPSSHGSSGGNQGPSSHGSSGGANKNPPKAGYK 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5162g00022 631 ProSitePatterns PPM-type phosphatase domain signature. 65 73 IPR000222 GO:0043169
Vium5162g00022 631 MobiDBLite consensus disorder prediction 286 621 - -
Vium5162g00022 631 CDD PP2Cc 33 280 IPR001932 -
Vium5162g00022 631 Gene3D - 26 285 IPR036457 -
Vium5162g00022 631 MobiDBLite consensus disorder prediction 286 631 - -
Vium5162g00022 631 SMART PP2C_4 24 278 IPR001932 -
Vium5162g00022 631 SUPERFAMILY PP2C-like 28 280 IPR036457 -
Vium5162g00022 631 PANTHER PROTEIN PHOSPHATASE 28 279 IPR015655 GO:0004722|GO:0006470
Vium5162g00022 631 Pfam Protein phosphatase 2C 63 273 IPR001932 -
Vium5162g00022 631 SMART PP2C_SIG_2 45 280 IPR001932 -
Vium5162g00022 631 FunFam probable protein phosphatase 2C 59 26 284 - -
Vium5162g00022 631 ProSiteProfiles PPM-type phosphatase domain profile. 34 280 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5162g00022 Vium-Chr5162 127316 132009 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5162g00022 1 305 PP2C-type Phosphatase Gene Family AT4G31750 82.143 0.0 528
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5162g00022 K17506 - vra:106761292 544.273