Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5162g00021 ATGATCACTTGGAAGCATTGGCAAGAAAGAAGACACATATTGGTTCAAAATTCCCAGGATGCAATTGTGAGCGGTGGGGGTCTAAGTCATAATGGAAAATTCAGCTATGGGTATGCTAGCTCTCCCGGCAAGAGATCTTCAATGGAAGATTTTTACGACACAAGAATTGATGGTGTTAATGGTGAAATCGTTGGCCTTTTCGGAGTTTTTGATGGTCATGGTGGTGCTCGTGCTGCTGAGTATGTCAAGAAAAACTTGTTTAGTAATTTGATCAGTCACCCAAAATTCATTTCTGACACCAAATCAGCAATATCTGATGCATATAATCATACCGATTCTGAGTTTCTGAAGTCAGAAAAGAACCAAAATAAAGATGCTGGTTCAACTGCTTCCACTGCGATTTTAGTTGGTGATCGCTTGCTTGTTGCAAATGTTGGGGATTCCAGAGCTGTCATATGCAGGGGTGGTAATGCTATTGCTGTTTCTCGAGACCACAAACCGGACCAAACTGATGAGAGGCAGAGGATTGAAGAGGCTGGAGGATTTGTTATGTGGGCTGGAACTTGGAGAGTTGGAGGTGTTCTTGCTGTTTCTCGAGCATTTGGTGATAGACTCTTAAAGCAATATGTTGTTGCTGATCCAGAAATTCAGGAAGAAAAAGTTGACAAGTCCCTTGAGTTTCTTATCCTAGCTAGTGATGGACTATGGGATGTTGTCACAAATGAGGAAGCAGTTACTATGATTAAACCAATTGAGGATGCTGAAGAAGCAGCAAAGAAGTTGATGCAAGAAGCATATGGGAGAGGTAGTGCTGACAATATCACATGTGTTGTGGTTCGCTTCTTGACTAACCATGGCACTTCTTCTCATGGTAATTCTGGAGTTAACCATGGCACTTCTTCTCATGGTAATTCTGGAGGTAACCATGGCACTTCTTCTCATGGTAATTCTGGAGGTAACCATGGCACTTCTCATGGTAGTTCTGGAGGTAACCATGGCACTTCTCTTGGTAGTTCTGGAGATAACCGTGGCACTTCTTCTCATGGTAATTCTGGAGGTAACCATGGTAGTTCTGGAGGTAACCATGGTACTTCCCATGGTACTTCTGGAGGTAACCATGGAACTTCTCATGGTAGTTCCGTAGGTAATCATGGCACTTCCCATGGTGATTCTGGACATAACCAGGGCATTTCTCATGGTAGTTCTGGAGGTAACCAAAGCATTTCTCATGGTAATTCTGGAGGTAACCAAGGCATTTCTCATGGTAGTTCTGGAGGTAACCAAGGCATTTCTCATGGTAGTTCTGGAGGTAACCAGGGCATTTCTCATGGTGGTTCTGGAGGTAACCATGGCAATTCTTCTCATAGTAGTTCTGGAGGTAACCAAGGCATTTCTCATGGTGGTTCTGGAGGTACTCATGGCACTTCTTCTCATGGTAGTTCTGGAGGTAACCATGGCACTTCACATGGTAGTTCTGGTGGTAACAATGGCATTTCTCATGGTGGTTCTGGAGGTAACCGTGGCACTTCTTCTATTGGTAGTTCTGGAGGTAACCATGACACTTCTTCCCATGGTAATTCTGGAGGTAACCATGGCATTTCTCAGGGTGGTTTTGGAGGTAACCAGGGCACTTCTTCTCATGGTAATTCTGGAGGTAACCATGGCACTTCTCATGGTAGTTCTGGAGGTAACCATGGCACTTCTCATGGTAGTTCTGGAGGTAACCTTGGCATTTCTCATGGTGGCTCTGGAGGTAACCATGGCACTTCTTCTCATGGTAGTTCTGGAGGTAATCAAGGGCCTTCTTCTCATGGTAGTTCTGGAGGTAATCAAGGCCCTTCTTCTCATGGTAGTTCTGGAGGTGCTAATAAGAACCCTCCGAAAGCTGGTTATAAGTGA 1899 0.4439 MITWKHWQERRHILVQNSQDAIVSGGGLSHNGKFSYGYASSPGKRSSMEDFYDTRIDGVNGEIVGLFGVFDGHGGARAAEYVKKNLFSNLISHPKFISDTKSAISDAYNHTDSEFLKSEKNQNKDAGSTASTAILVGDRLLVANVGDSRAVICRGGNAIAVSRDHKPDQTDERQRIEEAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEKVDKSLEFLILASDGLWDVVTNEEAVTMIKPIEDAEEAAKKLMQEAYGRGSADNITCVVVRFLTNHGTSSHGNSGVNHGTSSHGNSGGNHGTSSHGNSGGNHGTSHGSSGGNHGTSLGSSGDNRGTSSHGNSGGNHGSSGGNHGTSHGTSGGNHGTSHGSSVGNHGTSHGDSGHNQGISHGSSGGNQSISHGNSGGNQGISHGSSGGNQGISHGSSGGNQGISHGGSGGNHGNSSHSSSGGNQGISHGGSGGTHGTSSHGSSGGNHGTSHGSSGGNNGISHGGSGGNRGTSSIGSSGGNHDTSSHGNSGGNHGISQGGFGGNQGTSSHGNSGGNHGTSHGSSGGNHGTSHGSSGGNLGISHGGSGGNHGTSSHGSSGGNQGPSSHGSSGGNQGPSSHGSSGGANKNPPKAGYK 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5162g00021 632 ProSitePatterns PPM-type phosphatase domain signature. 66 74 IPR000222 GO:0043169
Vium5162g00021 632 PANTHER PROTEIN PHOSPHATASE 27 280 IPR015655 GO:0004722|GO:0006470
Vium5162g00021 632 ProSiteProfiles PPM-type phosphatase domain profile. 35 281 IPR001932 -
Vium5162g00021 632 SMART PP2C_4 25 279 IPR001932 -
Vium5162g00021 632 Gene3D - 27 286 IPR036457 -
Vium5162g00021 632 FunFam probable protein phosphatase 2C 59 27 285 - -
Vium5162g00021 632 MobiDBLite consensus disorder prediction 287 622 - -
Vium5162g00021 632 SUPERFAMILY PP2C-like 29 281 IPR036457 -
Vium5162g00021 632 CDD PP2Cc 34 281 IPR001932 -
Vium5162g00021 632 MobiDBLite consensus disorder prediction 287 632 - -
Vium5162g00021 632 Pfam Protein phosphatase 2C 64 274 IPR001932 -
Vium5162g00021 632 SMART PP2C_SIG_2 46 281 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5162g00021 Vium-Chr5162 127315 132009 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5162g00021 18 306 PP2C-type Phosphatase Gene Family AT4G31750 83.904 0.0 516
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5162g00021 K17506 - vra:106761292 577.015