Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5162g00018 ATGAAGATTGCGGTGGAAGGGTGCATGCATGGCGACCTGGACAACGTGTACAGGACCCTACAGCACTTGGAGAAATCCCAGAACACGAAAATCGACCTTCTCCTCTGCTGCGGCGATTTCCAAGCGGTTAGGAACGAACAGGATTTGAAGAGCTTGAACGTCCCGCCCAAGTATCGCTCCATGAATTCCTTCTGGAAGTACTATTCCGGCGCCGAGGTTGCCCCTTACCCCACCATCTTCATCGGCGGCAATCACGAAGCGTCCAATTATCTCTGGGAACTGTACTATGGAGGATGGGTTGCTCCTAATATCTACTTCTTGGGAGCTGCTGGGGTGGTGAGGTTTGGGAATGTCCGAATTGGTGGTCTCTCTGGGATCTATAATGATCGACACTATAAATTAGGACGTTATGAGAGGCCTCCCTATGATCAGAGTACCATTAGGTCTGTGTATCATGTTCGTGAGTATGATGTTCGCAAATTGATGGAACTTAAGGAGCCCATTGATGTTTTTCTTTCGCATGATTGGCCACTTAGAATCACTGATTATGGGGATTGGAAGGAGCTTGTTCGGCGCAAGCACTATTTTAGGCAAGAGATAGAGGAAAAAAGATTAGGGAGTAGAGCTGCTGCTGAACTTCTAGAAAAACTGAAACCAAATTATTGGTTTTCGGCTCACTTACACTGCAAGTTTGCTGCTCTGGTTCAGCATGGGGAAGGAGGTCCACTGACAAAATTCCTTGCACTGGACAAATGTATTGTCGGGCGTGATTTCTTACAGATTGTGGAAATTGAATCAGATGCAGGACCTTATGAGATTCGGTATGATGAAGAATGGTTAGCGATAACACGGAAGTTCAACCCTATCTTCCCTTTGACCACCAAAGGTGCAAACTTCAGAGGTTTAAATCTCGAGATGGAAGATTGTCTTGAATGGGTTAGAAGCAGGCTTCGTGAGAAGGGGTGCAAACCATTTGAATTTGTCAGAACAGCTCCTTCCTATGATCCTTCACGGTCCAATTTTGGTGGTGTATTGACTGTGAATCCCCGGAACCCTCAGACAGAATCTTTTTTGCAGCTTCTGGAACTTCCATATCTTCTTGATAGAAATCCTGATGCAAAGGACTTCTCACCTTATCCTTCTCTTTCAGTTAAAAGAGGCATTAGTGATCATAATGAGGAGATTCCCATTGATGATGTGGATGATGATGATGATGATGTAGAACTACCAAAAGTTGATAACGTTGAAAGTGGTTCTGTCAAGGGATTTGCTGCTATTGATTGCTTATGTTACCTCTGCTATTGTATCATTATCAAGTCCAACACTATGCACATTCAATGCATTGCCCCAGAAGTACTAAAAATTGGTTCTATGGAGACAAGAACAAGAACTCTTTTCCTAGCAATCTCTTATCTTTTTATGTTTTCTTTCGTTTGCTTTGTTAAGGGTAGCCTCTCTTTCAACTTCTATGCAGCTTCATGCCCATCGGCTGAGTTAATCATAAGAGACACAGTTAATTCATTCTCTTCTACTGATCCTTCTATTCCTGGAAAGCTCCTTCGCTTGGTTTTCCATGATTGCTTTGTGGAGGGATGCGATGCCTCTTTGATGCTGCAAGGGAACAATACAGAACAAAGTGATCCAGGAAATAGATCTGTTGGAGGATTTTCAGTGATAGATTCAGCAAAAAGGGTCATTGAGAAATTCTGCCCTGGAACTGTTTCTTGTGCGGACATAATAGCTATGGCTGCTAGAGATGCTGTTGAAATAGCTGGTGGACCTAGAATTATGATTCCTACAGGTAGGAGAGATGGGATGATTTCACTTGCTTCAAATGTCAGACCCAACATTGTGGATACCAGTTTTTCAATGGATGAGATGGTTCAACTCTTTGCCACTAAAGGATTATCCTTACTTGATCTTGTGGTCCTTTCAGGAGCTCATACCATAGGCACAGCACATTGCAGCTCATTCAGGGATCGTTTTGAAGAAGATTCAAGGGGAAAGCTTATGCTGGCTGACAAAACCCTTGACAGTGACTATGCTGAAGTGCTGATGGAACAATGTCCATCTGGTGTACAACCATCTGTAAAGGTGAACAATGATCCTCAAACATCTTTGGTCTTTGACAACATGTACTACCAAAATCTTCTGGCTCACAAGGGCCTCTTCCAATCAGATTCTGTTCTCATAAGCAATGATAGCACAAGGATATTAGTGCAGGATTTTGCAAATGATCAAGACCTTTTCTTTCAAAATTGGGCTCAGTCCTTCTTGAAGCTCACCACTGTTGGAGTCAAATCTGGTGATGTGGGTGAAATTAGAATATCTTGTGCATCAACTAATGCATAA 2352 0.4303 MKIAVEGCMHGDLDNVYRTLQHLEKSQNTKIDLLLCCGDFQAVRNEQDLKSLNVPPKYRSMNSFWKYYSGAEVAPYPTIFIGGNHEASNYLWELYYGGWVAPNIYFLGAAGVVRFGNVRIGGLSGIYNDRHYKLGRYERPPYDQSTIRSVYHVREYDVRKLMELKEPIDVFLSHDWPLRITDYGDWKELVRRKHYFRQEIEEKRLGSRAAAELLEKLKPNYWFSAHLHCKFAALVQHGEGGPLTKFLALDKCIVGRDFLQIVEIESDAGPYEIRYDEEWLAITRKFNPIFPLTTKGANFRGLNLEMEDCLEWVRSRLREKGCKPFEFVRTAPSYDPSRSNFGGVLTVNPRNPQTESFLQLLELPYLLDRNPDAKDFSPYPSLSVKRGISDHNEEIPIDDVDDDDDDVELPKVDNVESGSVKGFAAIDCLCYLCYCIIIKSNTMHIQCIAPEVLKIGSMETRTRTLFLAISYLFMFSFVCFVKGSLSFNFYAASCPSAELIIRDTVNSFSSTDPSIPGKLLRLVFHDCFVEGCDASLMLQGNNTEQSDPGNRSVGGFSVIDSAKRVIEKFCPGTVSCADIIAMAARDAVEIAGGPRIMIPTGRRDGMISLASNVRPNIVDTSFSMDEMVQLFATKGLSLLDLVVLSGAHTIGTAHCSSFRDRFEEDSRGKLMLADKTLDSDYAEVLMEQCPSGVQPSVKVNNDPQTSLVFDNMYYQNLLAHKGLFQSDSVLISNDSTRILVQDFANDQDLFFQNWAQSFLKLTTVGVKSGDVGEIRISCASTNA 783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5162g00018 783 FunFam Peroxidase 488 629 - -
Vium5162g00018 783 CDD secretory_peroxidase 485 778 IPR033905 GO:0004601|GO:0042744
Vium5162g00018 783 Pfam Peroxidase 503 746 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium5162g00018 783 ProSiteProfiles Plant heme peroxidase family profile. 484 782 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium5162g00018 783 PANTHER RNA LARIAT DEBRANCHING ENZYME 1 406 - -
Vium5162g00018 783 Gene3D Peroxidase, domain 2 618 761 - -
Vium5162g00018 783 PRINTS Plant peroxidase signature 592 607 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium5162g00018 783 PRINTS Plant peroxidase signature 518 538 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium5162g00018 783 PRINTS Plant peroxidase signature 700 715 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium5162g00018 783 PRINTS Plant peroxidase signature 756 769 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium5162g00018 783 PRINTS Plant peroxidase signature 494 513 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium5162g00018 783 PRINTS Plant peroxidase signature 716 733 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium5162g00018 783 PRINTS Plant peroxidase signature 554 567 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium5162g00018 783 PRINTS Plant peroxidase signature 573 583 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium5162g00018 783 PRINTS Plant peroxidase signature 639 651 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium5162g00018 783 FunFam Peroxidase 618 761 - -
Vium5162g00018 783 Pfam Lariat debranching enzyme, C-terminal domain 244 364 IPR007708 GO:0006397|GO:0016788
Vium5162g00018 783 CDD MPP_Dbr1_N 3 259 IPR041816 -
Vium5162g00018 783 Gene3D - 488 782 - -
Vium5162g00018 783 FunFam Lariat debranching enzyme 9 251 - -
Vium5162g00018 783 Gene3D - 8 248 IPR029052 -
Vium5162g00018 783 SMART DBR1_2 235 367 IPR007708 GO:0006397|GO:0016788
Vium5162g00018 783 SUPERFAMILY Metallo-dependent phosphatases 1 241 IPR029052 -
Vium5162g00018 783 PRINTS Haem peroxidase superfamily signature 516 530 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium5162g00018 783 PRINTS Haem peroxidase superfamily signature 640 655 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium5162g00018 783 PRINTS Haem peroxidase superfamily signature 574 591 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium5162g00018 783 PRINTS Haem peroxidase superfamily signature 702 717 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium5162g00018 783 PRINTS Haem peroxidase superfamily signature 592 604 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium5162g00018 783 SUPERFAMILY Heme-dependent peroxidases 485 782 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vium5162g00018 783 Pfam Calcineurin-like phosphoesterase 1 229 IPR004843 GO:0016787
Vium5162g00018 783 ProSitePatterns Peroxidases proximal heme-ligand signature. 640 650 IPR019793 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5162g00018 Vium-Chr5162 91804 99577 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5162g00018 471 782 Peroxidase AT4G31760 60.383 4.21e-138 409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5162g00018 K18328 - cave:132189503 1041.57