Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5162g00010 ATGGGAATATATCTCAGCACTCCCAAAGTTGAAAAGTTTTCTGAAGATGGTGAAAATGAGCATCTTAGATATGGTTTATCATCCATGCAAGGGTGGCGTGCAACAATGGAAGATGCTCATGCTGCATATACTAATCTGGATGATTCAACTTCATTTTTTGGTGTCTACGATGGTCATGGAGGTAAGGTGGTTGCAAAGTTTTGTGCGAAGTTTCTCCACCAAGAGGTGCTCAAAAGTAAAGCATACTTAACAGGAGATATAGGAACCTCTCTTCAGAAATCCTTTTTAAGAATGGATGAGATGATGCGTGGTCAAAGGGGATGGAGAGAATTATCAATATTGGGGGATAAGATAAACAAGTTTACCGGGATGATAGAAGGTTTGATTTGGTCTCCAAGAAGCAGTGATGGTAATTGCCAAGTTGATGATTGGGCTTTTGAGGAGGGCCCTCATTCTGATTTTGCTGGACCAACTTCGGGAAGCACTGCCTGTGTTGCAGTTATTAGAAACAACCAACTTGTTATTGCAAATGCTGGTGATTCGCGATGTGTGATATCTCGGAAGGGTCAGGCATACAATTTGTCTAGAGACCACAAACCTGATCTTGACATTGAGAAGGAAAGAATCTTAAAAGCTGGTGGTTTTATTCACGCTGGACGAGTTAATGGAAGTTTAAATCTTACAAGAGCTATTGGTGACATGGAATTTAAACAGAATAAATTTCTTGCTGCTGAGAAACAAATTTTAACTGCCAATCCAGACATAAACACTGTTGAGCTTTGTGACGAAGATGAATTTGTGGTGTTAGCTTGTGATGGCATATGGGATTGCATGTCAAGTCAACAACTAGTAGATTTTATTCATGCCCAATTGCACACGGAAACCAGACTTTCTACTGTGTGTGAAACAGTACTTGACCGGTGTTTGGCACCATCAACTGCCGTTGGCGAGGGATGTGACAATATGACCATGATCTTGGTGCAGTTCAAAAGACCTGCTCGGTCCAGTGAATCAACAGAAGAGCAATCCTCTTCAACCGGACAAGCTGAACCTGAAACACAACTAGAGAGAAGTGAAAGAACGGAGCTTTAA 1092 0.4139 MGIYLSTPKVEKFSEDGENEHLRYGLSSMQGWRATMEDAHAAYTNLDDSTSFFGVYDGHGGKVVAKFCAKFLHQEVLKSKAYLTGDIGTSLQKSFLRMDEMMRGQRGWRELSILGDKINKFTGMIEGLIWSPRSSDGNCQVDDWAFEEGPHSDFAGPTSGSTACVAVIRNNQLVIANAGDSRCVISRKGQAYNLSRDHKPDLDIEKERILKAGGFIHAGRVNGSLNLTRAIGDMEFKQNKFLAAEKQILTANPDINTVELCDEDEFVVLACDGIWDCMSSQQLVDFIHAQLHTETRLSTVCETVLDRCLAPSTAVGEGCDNMTMILVQFKRPARSSESTEEQSSSTGQAEPETQLERSERTEL 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5162g00010 363 PANTHER PROTEIN PHOSPHATASE 2C 23 328 IPR015655 GO:0004722|GO:0006470
Vium5162g00010 363 SMART PP2C_SIG_2 28 329 IPR001932 -
Vium5162g00010 363 Pfam Protein phosphatase 2C 155 313 IPR001932 -
Vium5162g00010 363 Pfam Protein phosphatase 2C 23 104 IPR001932 -
Vium5162g00010 363 CDD PP2Cc 23 329 IPR001932 -
Vium5162g00010 363 MobiDBLite consensus disorder prediction 331 363 - -
Vium5162g00010 363 SUPERFAMILY PP2C-like 3 331 IPR036457 -
Vium5162g00010 363 ProSiteProfiles PPM-type phosphatase domain profile. 23 329 IPR001932 -
Vium5162g00010 363 MobiDBLite consensus disorder prediction 338 352 - -
Vium5162g00010 363 ProSitePatterns PPM-type phosphatase domain signature. 52 60 IPR000222 GO:0043169
Vium5162g00010 363 Gene3D - 1 330 IPR036457 -
Vium5162g00010 363 SMART PP2C_4 13 327 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5162g00010 Vium-Chr5162 62130 69895 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5162g00010 1 341 PP2C-type Phosphatase Gene Family AT2G25070 75.953 0.0 577
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5162g00010 K17499 - gmx:100787778 645.966