Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5162g00005 ATGGCTAGTTCCTCAAGAGCCGTCTCTGCATCCCTTTTGTTCTTTTTCCTTCTCCTTGGATTCTCAGCAGCTAAGGAACTATTAGTTGGAGGCAAGATTGATGCTTGGAAGATTCCATCTTCAGAAGTAGATTCTCTCAATCAATGGGCTGAAAAGTCTCGTTTCAGAGTTGGCGACTATTTGGTGTGGAAATTCGAAAGTGGGAAGGACTCAGTGTTGGAAGTAACAAGGGAGGAATATGGTAATTGCAGCACCTCCAACCCAATCAAAGAGTACAGTGATGGGAATACTAAGGTGATGCTAGAACGTCCTGGGCCATTCTACTTCATCAGTGGAGCAAAGGGGCACTGTGAGAAGGGCCAAAAGTTGGTTGTGGTTGTTATTTCTCCAAAGCACACATTCCGTGCAATTTCTCCGGCACCTTCTCCGGCGGAGTTTGAGGCTCCAGCTGTTGCTCCTACTAGTACTGCTACAAACTTGCAAGTTGCTCTTCTAACCTCAACTCTCGGAGTGTTTGCCATGACTTTGGTGGTCACGTTCTTTTAA 546 0.4597 MASSSRAVSASLLFFFLLLGFSAAKELLVGGKIDAWKIPSSEVDSLNQWAEKSRFRVGDYLVWKFESGKDSVLEVTREEYGNCSTSNPIKEYSDGNTKVMLERPGPFYFISGAKGHCEKGQKLVVVVISPKHTFRAISPAPSPAEFEAPAVAPTSTATNLQVALLTSTLGVFAMTLVVTFF 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5162g00005 181 Gene3D - 23 132 IPR008972 -
Vium5162g00005 181 FunFam Early nodulin-like protein 1 24 132 - -
Vium5162g00005 181 CDD OsENODL1_like 25 128 IPR041846 -
Vium5162g00005 181 PANTHER BLUE COPPER PROTEIN 26 147 IPR039391 GO:0009055
Vium5162g00005 181 Pfam Plastocyanin-like domain 36 121 IPR003245 GO:0009055
Vium5162g00005 181 SUPERFAMILY Cupredoxins 24 128 IPR008972 -
Vium5162g00005 181 ProSiteProfiles Phytocyanin domain profile. 25 129 IPR003245 GO:0009055
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5162g00005 Vium-Chr5162 45651 46769 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5162g00005 11 171 Phytocyanin Superfamily AT2G25060 56.790 1.23e-61 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5162g00005 - - gmx:100305551 255.758