Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium515g00001 ATGGCTGAAGAGTTTCAAGCTAGAATTTGTGGTGAAAACTGGTGGAGTAGTTCTATTGATTCATCACCGATTGCTTCTTCTCCTTGTTCCGTGGCAGCTCATAATGATGCAGGAATCTACAGCACTCGTCAAACAGATTTGAAGGCAACCAAGTGCTGTGTTGAAGAGACTAACAATTTGCTTTCCAACACGTACCTGGGTTTTGCTGATGCACAGAAGTCACCCAAGAGTGAATCAGCCAGAGGAAGTGACAGCTTGTTGATCGATTCCACCTTACAGATGATGGGTTTTGGCCTTACATCTTCAGCATCAGACAATTGGAATCAACATCTATTAGTTCGATGCAATGGAAGGGCAGAGAGCAATTTTGATTCCGTGCTTCAGGAAGAAACGGGAATAGATTCTTCTAATTCACAAATCCGCAGGAATTGGAACCCAAAGAGCTTCTCCTGTGCTGGTGGAGGACACCAACAAATTGATAATTTCAAGCCATTGAATCAAGAATTTTCAGTAGATTACCAGAATCTATGTTCGTTAACCAGCAATGGGTTATCATCAAATCGTGATTTTGCAATTGGATCAGCCTCATATGGTAACCCTTCACCGTTACGAAGCTTATATGAACCTGATCCTCATCCACAATTACCACAGCACTCACTTTTCACCAACCATTCAATGTCCTATTCATCAAAAGCAAGTTATGGGACACCCTGCACTGAACTAACGCCAACATGGTCTAAAGTCACTACTTTTCTGAAGCCCACAACTATAGCAAAGCAACACCCTATTGGACTTCACTTTTCTAACAACACCACTTTCTGGAGTGCTTCCGCCGACGCACTTAACGACATAAGAGCAGGTACCTTTGCTTCATCACAATCACAATATCAAACGCCAACTTTCGATCAAGAGAAACCCAATTGCCCAAGTAGTCTATTAAACAAGCTCAACAGTGAAGAAACTCTAGATTCGGCAACAATGGCGAAGAAAGATGCTTGTGAAGCAGCATTAAAGAGGCCAAGGATTGAAACTCCGTCCCCATTACCGACTTTTAAGGTTCGGAAAGAGAAGCTAGGGGACCGGGTCACTGCTCTTCAGCAATTGGTTTCACCTTTCGGAAAGACCGACACCGCATCCGTTCTTCACGAAGCCATCGAGTACATCAAGTTCCTTCATGATCAAGTCAATGTTTTGAGTACCTCATATATGAAAAACGGAGCTCCCATCCAACCGCAGCAGGTGTGTGATGATCTGAAAGACTCAGAAGGACCACATGAAGATTTAAAAAGTCGAGGTCTGTGTCTGGTACCGATTTCAAGCACATTTCCAGTTGCAACAGAAACCACTAGCAGTGCTGAATTGTGGACGCCTACATTCAGGGGCGCTCTGTTGAGGTAG 1398 0.4378 MAEEFQARICGENWWSSSIDSSPIASSPCSVAAHNDAGIYSTRQTDLKATKCCVEETNNLLSNTYLGFADAQKSPKSESARGSDSLLIDSTLQMMGFGLTSSASDNWNQHLLVRCNGRAESNFDSVLQEETGIDSSNSQIRRNWNPKSFSCAGGGHQQIDNFKPLNQEFSVDYQNLCSLTSNGLSSNRDFAIGSASYGNPSPLRSLYEPDPHPQLPQHSLFTNHSMSYSSKASYGTPCTELTPTWSKVTTFLKPTTIAKQHPIGLHFSNNTTFWSASADALNDIRAGTFASSQSQYQTPTFDQEKPNCPSSLLNKLNSEETLDSATMAKKDACEAALKRPRIETPSPLPTFKVRKEKLGDRVTALQQLVSPFGKTDTASVLHEAIEYIKFLHDQVNVLSTSYMKNGAPIQPQQVCDDLKDSEGPHEDLKSRGLCLVPISSTFPVATETTSSAELWTPTFRGALLR 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium515g00001 465 FunFam Transcription factor bHLH123 family 352 414 - -
Vium515g00001 465 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 352 408 IPR036638 GO:0046983
Vium515g00001 465 Gene3D - 352 411 IPR036638 GO:0046983
Vium515g00001 465 CDD bHLH_AtbHLH_like 348 399 IPR045239 -
Vium515g00001 465 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 342 391 IPR011598 GO:0046983
Vium515g00001 465 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 182 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium515g00001 Vium-Chr515 17278 21094 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium515g00001 267 465 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G61660 52.195 1.10e-50 175
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium515g00001 - - gmx:100784084 671.389