Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5153g00001 ATGGCCAACAAGGACAGAATGAAGGACATTATTAAGTTGAGAAAAGGGTGTGGTTCACCTGATGAAGAAAAGCTGATAAGGTACATGCTCACAAACGGACAAGGGTGTTGGAGTGACATTGCAAGGAACGCAGGTCTCCAACGATGTGGCAAAAGTTGTCGTCTTCGTTGGATTAATTACTTGAGACCTGACCTCAAACGTGGTGCATTCTCATCCCAGGAACAACTCCTCATCTTTCATTTGCATTCCATTTTTGGTAACAGGTGGTCTCAGATTGCAGCACGTCTCCTGGTCGAAGACAATGAAATAAAGAATTTCTGGAACTCTACATTGAAGAAAAGGATGAAAACTAACACTTCAGTGAACAACAGCACTGACTCATCAGAGTCTAAAGATGTTCTGAGTGGGATCATGCCCTTTAATGACCATGACATCATGAACATGAGCATGAGCATGGATTCCTCTTCATCCATATCATCCATGCAAGCAATGGTTTTGGCTGACCAATTTGACCCTTTTTCCTTGTTGGTAAACAATCACTGTGATATGACTAATGTTTCAGAAATTTTTACCTGCATGGAAGATGGACACCAAGTGAATCATGGGACATTGGAAGCAAATAACAAAATGGGGTTAGGAAGAGACTTCTCCCTTCCTTCGTTAGAAAGTAGAAGCATTGAAAGTGACATTGTTCCAATTGATGTGAAAAGCCATAACAACCACTTCAATTATGGTTCCTTCAATAACACTGATAACATTCAAGGCTCCAAAGCTAGAGGACTTAATGGGGTTGCAAATCATGGCCAAGGGGAAACTTATTTGGAGAACTTGATCAAGACATAA 843 0.4093 MANKDRMKDIIKLRKGCGSPDEEXKLIRYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSSQEQLLIFHLHSIFGNRWSQIAARLLVEDNEIKNFWNSTLKKRMKTNTSVNNSTDSSESKDVLSGIMPFNDHDIMNMSMSMDSSSSISSMQAMVLADQFDPFSLLVNNHCDMTNVSEIFTCMEDGHQVNHGTLEANNKMGLGRDFSLPSLESRSIESDIVPIDVKSHNNHFNYGSFNNTDNIQGSKARGLNGVANHGQGETYLENLIKT 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5153g00001 281 CDD SANT 19 62 IPR001005 -
Vium5153g00001 281 Gene3D - 69 135 - -
Vium5153g00001 281 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Vium5153g00001 281 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 116 IPR017930 -
Vium5153g00001 281 SUPERFAMILY Homeodomain-like 19 93 IPR009057 -
Vium5153g00001 281 Gene3D - 19 67 - -
Vium5153g00001 281 FunFam MYB transcription factor 12 68 - -
Vium5153g00001 281 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 66 IPR017930 -
Vium5153g00001 281 PANTHER MYB DOMAIN PROTEIN 55 12 225 - -
Vium5153g00001 281 SMART sant 14 64 IPR001005 -
Vium5153g00001 281 SMART sant 67 114 IPR001005 -
Vium5153g00001 281 ProSiteProfiles Myb-like domain profile. 63 112 IPR001005 -
Vium5153g00001 281 Pfam Myb-like DNA-binding domain 19 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5153g00001 Vium-Chr5153 8838 10424 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5153g00001 12 192 MYB Transcription Factor Family AT3G08500 55.556 3.60e-60 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium5153g00001 Myb_DNA-binding 1.8e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5153g00001 K09422 - gmx:100784755 389.037