Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5151g00001 ATGGATAGTGCCTACTACAATCAGCAACACCTCCCTCACCTCGACAACAGCAATGAACCACATTTACCTCCTGGCTTCAGGTTCCATCCGACAGACGAGGAACTCATCACATACTACCTCCTCAAGAAGGTTCTAGACAGTTCCTTCACTGGCCGAGCCATAGTTGAAGTCGATCTCAACAAGTGCGAACCGTGGGAGCTTCCTGAGAAAGCAAAGATGGGCGAGAAGGAATGGTACTTTTATAGCCTTCGTGACCGGAAGTACCCAACTGGCTTACGCACCAACAGGGCCACGGAGGCTGGTTATTGGAAAGCCACCGGAAAAGACAGAGAGATCTACAGCTCCAAAACCTGTTCCCTCGTTGGAATGAAGAAAACCCTGGTTTTCTATAGAGGAAGAGCTCCAAAGGGTGAAAAGAGCAACTGGGTCATGCATGAGTATCGTTTAGAAGGCAAATTCGCTTACCACTACCTCTCCAGAAGCTCAAAGGATGAGTGGGTGATATCGCGTGTGTTTCAGAAGAACAACACCGGCGGTGCCTCCACTGTGTCAGCCGCCGCAGCCACCGGCAGTTCGAAGAAAACAAGAATGAGCACATCGAACACAAGCAGCAACATGAGCCTCTGCCCGGAACCGGGTTCACCCTGTTCCATTTACCTCCCACCGCTTCTAGAATCTTCTCCTTACGCCACCAGCGGCAGCGCCGCTGCAACGTTCAACGACCGCGAAAACTACTCCTTCGAAAGTGCCGCCGCCACCGCCAACCAAAGGGAGCACGTGTCCTGTTTCTCCACCATGTCCACCGACGCTGCCGCCTTCAACCACCTCGCTCCGCCGCCGGAACCGCCACTCGATCCTTTCTCCCGCTTTCACAGGAACAACATTGGAGTATCCGCCTTCCCATGTCTGAGGTCCTTGCACGACAACCTTAACCTCCCCTTCTTTTTCCCTCCCGTGGTCCACGGCGGTTCTGACGTAGCAAACTTTACCGCCATAGCAAACTTGCCGGCGCCGGAGGATCCGAGGGTGGCCGACGGCAGTTCTGGCATGCCGATTGTACCGTCCGAATTGGACTGCATGTGGGGCTATTGA 1092 0.5403 MDSAYYNQQHLPHLDNSNEPHLPPGFRFHPTDEELITYYLLKKVLDSSFTGRAIVEVDLNKCEPWELPEKAKMGEKEWYFYSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTCSLVGMKKTLVFYRGRAPKGEKSNWVMHEYRLEGKFAYHYLSRSSKDEWVISRVFQKNNTGGASTVSAAAATGSSKKTRMSTSNTSSNMSLCPEPGSPCSIYLPPLLESSPYATSGSAAATFNDRENYSFESAAATANQREHVSCFSTMSTDAAAFNHLAPPPEPPLDPFSRFHRNNIGVSAFPCLRSLHDNLNLPFFFPPVVHGGSDVANFTAIANLPAPEDPRVADGSSGMPIVPSELDCMWGY 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5151g00001 363 FunFam NAC domain-containing protein 100-like 31 178 - -
Vium5151g00001 363 SUPERFAMILY NAC domain 18 174 IPR036093 GO:0003677|GO:0006355
Vium5151g00001 363 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 21 241 - -
Vium5151g00001 363 MobiDBLite consensus disorder prediction 180 208 - -
Vium5151g00001 363 Gene3D NAC domain 31 178 IPR036093 GO:0003677|GO:0006355
Vium5151g00001 363 ProSiteProfiles NAC domain profile. 22 174 IPR003441 GO:0003677|GO:0006355
Vium5151g00001 363 Pfam No apical meristem (NAM) protein 23 149 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5151g00001 Vium-Chr5151 73600 76142 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5151g00001 1 363 NAC Transcription Factor Family AT5G53950 50.505 3.53e-120 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vium5151g00001 NAM 3.8e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5151g00001 - - gmx:100788671 591.267