Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5146g00009 ATGTCTGATATGATGAGGCAGGGGAATGCTTTGCATGATGAAGAGCTTAAACATGATGAGAGAACGGCACCAGAGAGCACCACAAACGGGGAAAAGAAAGAAAAGAGACAACAAAAGCAAAAGGATGATAGGGTTCCATATCACAGGCTGTTCTTATTTGCAGACTCCACTGACATCATTTTGATGGTTGTTGGCACCATTGGAGCCATTGGAAATGGCCTTGGGATGCCTCTCATGGCTTTTATTTTCGGGGAACTCATTGATAGCTTTGGCAATAACCAGTTTGGCCCCAACGTTGTCAAACAAGTTTCCAAGGTCTGCCTGAAATTTGTGTACTTAGGAATAGGCACTGGTATAGCTGCTTTCCTCCAGGTGACTTGCTGGATGATCACAGGGGAAAGACAGGCTGCAAGGATAAGGGGCTTGTATTTGAAAGCTATACTAAGACAGGATATTGCTTTCTTTGACAAGGAAACTAACACTGGAGAGGTGATAGGGAGGATGTCAGGTGACACTGTTCTCATACAAGATGCTATGGGTGAGAAGGTTGGGAGATTTCTGCAGCTAGTAGCAACCTTTTTAGGGGGATTTGTGATTGCATTTATCAAAGGATGGCTTCTAACTGTTGTCATGTCATCCGTCGTTCCACTTGTTTCTGCTGCTGCCGCTTCTATGGCCCTTATCATAGGAATGATGGCAAGCCGAGGCCAAAACGCGTATGCGAAAGCTTCACAAGTAGTTGAAGAAACAATAGGTTCAATAAGAACTGTTGCATCCTTTACAGGGGAAAAGCAAGCAGTGTCTATTTACAAGAAATTTCTTGCTGACGCTTATAAATCAGGAGTTCATGAAGGTTTAGTAAGTGGAGTGGGTTTCGGCATGGTTTTGTTCGTTATGTTCTGCGGTTATGGTTTGTCTGTATGGTTTGGCGCAAAGATGATAATGGAAAGAGGATATGGTGCGGGTGCGGTGGTCAATGTGTTTGTTGCTGTGTTAAATGCTTCCATGTCTCTGGGTCAGGCATCTCCTTCTATGAACGCTTTTGCTGAAGGTCAAGCGGCAGCTTATAAAATGTTTCAGACAATTGAGAGAAAGCCAGTGATAGATGCTTATGACCCAAATGGAAAAAACCTAGAGGATATTCATGGTGAAATCCATTTGAGGAATGTTTATTTCAGCTATCCAGCCAGACCTGAGGAGTTGATATTCAATGGATTCTCTCTTCATATAGCTAGTGGCACTACGGCAGCTTTAGTAGGACAAAGTGGAAGTGGGAAATCTACAGTTATCAGTTTAATTGAAAGATTCTACGATCCACAGGCTGGTGAAGTTCTTATCGATGGCACTAATGTGAAAGAATTTGAGCTCAGGTGGATCAGAGGAAAAATTGGCCTTGTCAGTCAGGAGCCAGTGTTTTTTGCATCTAGCATTAAGGATAATATTGCGTATGGAAAAGATGGATCAACAGTTGAAGAGATAAGAGGTGCAGCTGAACTTGCAAATGCTGCTAAATTCATTGACAAACTGCCACAGGGATTGGACACAATGGTTGGTGAGAATGGAACTCAATTATCCGGTGGACAGAAGCAGCGCATTGCCATTGCCAGAGCAATCCTAAAAGATCCAAGAATTTTACTTTTAGATGAAGCAACAAGTGCACTTGACGCAGAGTCAGAAAGAATAGTGCAAGAAGCTCTAGACAGGATTATGGTCAACAGAACTACTGTCATTGTCGCACATCGCCTGAGCACGGTGAGAAATGCTGATATGATTGCAGTAATTCATAGAGGGAAAATGATTGAAAAAGGGAGACACGAAGAATTAACCAAGGATCCTGAGGGAGCATACTCTCAACTGATACGTTTACAAGAAGGAAACCAGGCATCAGAAGAAACAAGAGACAGCCAAAACAAAAGGGAAATTTCCTCAGAATCCTTTAAAAAGTTGAGTCAAAGGCTGTCATTTCGAAGATCAGGATCATCTGTGGGGAACAGTAGCCGCCACTCTTTTTCAGTTTCATTTGGTTTTCCTACAGCAATTAGCATCCCTGATCCTGACCTTGAAAACTCACAGCCTCGAGAAAAATCGCCAGAAATTTCACTCTGGCGCCTTGCTTCCCTCAATAAGTTAGAGATTCCAGTGCTTCTGATTGGATGTGTAGCTGCAATAGCAAATGGTGTTATATATCCAATATTTGGCGTATTGCTCTCCAGAATTATCAAAACATTTTTTAAACCTTTTCCTGAGATGAAAAGTGATTCCAAGTTTTGGGCACTCATGTTTGTGATCCTTGGAATTGCTTCTTTAATAGCAATTCCAGCCAGAAGTTACTTTTTCTCTGTGGCGGGCAGTAAGTTAATCCGACGAATCAGGCTCATTTGTTTTGAGAAGGTGATAAACATGGAAGTTGGGTGGTTTGATGAGCCTGAGAACTCTAGTGGTGCAATTGGTGCAAGGCTCTCAGCAGATGCTGCATCAGTGCGAGCCCTTGTTGGTGATGCTCTAGGATTATTGGTTCAAAATATAGCGACAGCATTGACAGGTTTGATTATTGCTTTCATTGCGAGCTGGCAATTGGCGTTTATTGTTCTTGTTTTGGTTCCCCTTTTTGGAATGAATGGCTATATCCAAATGAAATTCATGAAGGGATCCAGCACAGATGCAAAGATGATGTATGAGGAAGCAAGCCAAGTTGCTAATGATGCAGTTGGAAGCATACGAACAGTAGCTTCTTTCTGTGCAGAGGAGAAAGTTATGGAACTATACAGGAAAAAATGTGAAGTTCCCATGAAAGCAGGGATTAGACAAGGCTTGATAAGTGGAACAAGTTATGGTCTTTCATTTTTCTTGTTCTTCAGTGTCTATGCAACCAATTTCTATGCTGGAACCAGACTTGTGGAAGCTGGCAAGGCATCATTCACAGATGTTTTTCTGGTTTTCTTTGCTTTAACTATGTCATCTGTTGGAATTTCCCAATCAAGCTCCCTTGCTCCTGATTCTAACAAAGCCAAGATAGCAACTGCTTCCATATTTAGAATAATTGACACGAAATCGAAGATAGACCCTAGTGATGAAGTCGGTAGCACACTGGATAGTGTAAAAGGAGAAATACAGATTCGTCATGTAAGCTTTAGGTATCCATCAAGGCCAGATATACAAATTTTTCGAGACTTAAACTTGACCATCCATTCGGGCAAGACTTTGGCCATTGTTGGTGAAAGTGGGAGTGGAAAATCCACGGTGATTGCCTTGTTACAGAGATTTTATGATCCTGATTCTGGTCAAATTACAATTGATGGGGTAGAAATTCAGAATTTAAAACTCAAGTGGTTAAGGCAGCAGATGGGACTTGTAAGCCAAGAGCCAGTCTTGTTCAATGCCACCATCCGTGACAATGTCGCATATGGAAAGGAAGGCAATGCTAATGAAGCAGAAGTCATAACCGCTGCCAAATTGGCCAATGCACATGGCTTTGTTAGTGGTTTACAACAGGGTTATGATACAGTAGTGGGAGAAAGGGGAATCCAACTGTCTGGTGGGCAGAAGCAAAGGGTGGCCATTGCACGTGCTATAATTAAAAGTCCAAAGATTCTGCTACTTGATGAGGCCACAAGTGCACTGGACGCTGAGTCAGAGAGAGTTGTTCAAGATGCCTTAGATAAAGTGATGGTGAGCAGGACCACTGTGGTTGTGGCTCATCGTTTATCTACAATAAAAAATGCAGATGTGATTGCAGTGGTTAAAAATGGCGTTATAGTGGAAAAAGGAAGGCATGAAACACTACTTAATCAAGGATGGGTTTTATGCTTCCTTGGTCCAACTTCATACAAGTTCTACTACACCATGATATTGTTTGCCATAATGTTTTTCTTCTTTCACTTTTCCAAAAAAGTTCTCCTTCTTTCCACATTAGTCTTGTGTAGTTCAATAAAAGTGGTAGACACAAATATCTGA 3954 0.4188 MSDMMRQGNALHDEELKHDERTAPESTTNGEKKEKRQQKQKDDRVPYHRLFLFADSTDIILMVVGTIGAIGNGLGMPLMAFIFGELIDSFGNNQFGPNVVKQVSKVCLKFVYLGIGTGIAAFLQVTCWMITGERQAARIRGLYLKAILRQDIAFFDKETNTGEVIGRMSGDTVLIQDAMGEKVGRFLQLVATFLGGFVIAFIKGWLLTVVMSSVVPLVSAAAASMALIIGMMASRGQNAYAKASQVVEETIGSIRTVASFTGEKQAVSIYKKFLADAYKSGVHEGLVSGVGFGMVLFVMFCGYGLSVWFGAKMIMERGYGAGAVVNVFVAVLNASMSLGQASPSMNAFAEGQAAAYKMFQTIERKPVIDAYDPNGKNLEDIHGEIHLRNVYFSYPARPEELIFNGFSLHIASGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGTNVKEFELRWIRGKIGLVSQEPVFFASSIKDNIAYGKDGSTVEEIRGAAELANAAKFIDKLPQGLDTMVGENGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERIVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKMIEKGRHEELTKDPEGAYSQLIRLQEGNQASEETRDSQNKREISSESFKKLSQRLSFRRSGSSVGNSSRHSFSVSFGFPTAISIPDPDLENSQPREKSPEISLWRLASLNKLEIPVLLIGCVAAIANGVIYPIFGVLLSRIIKTFFKPFPEMKSDSKFWALMFVILGIASLIAIPARSYFFSVAGSKLIRRIRLICFEKVINMEVGWFDEPENSSGAIGARLSADAASVRALVGDALGLLVQNIATALTGLIIAFIASWQLAFIVLVLVPLFGMNGYIQMKFMKGSSTDAKMMYEEASQVANDAVGSIRTVASFCAEEKVMELYRKKCEVPMKAGIRQGLISGTSYGLSFFLFFSVYATNFYAGTRLVEAGKASFTDVFLVFFALTMSSVGISQSSSLAPDSNKAKIATASIFRIIDTKSKIDPSDEVGSTLDSVKGEIQIRHVSFRYPSRPDIQIFRDLNLTIHSGKTLAIVGESGSGKSTVIALLQRFYDPDSGQITIDGVEIQNLKLKWLRQQMGLVSQEPVLFNATIRDNVAYGKEGNANEAEVITAAKLANAHGFVSGLQQGYDTVVGERGIQLSGGQKQRVAIARAIIKSPKILLLDEATSALDAESERVVQDALDKVMVSRTTVVVAHRLSTIKNADVIAVVKNGVIVEKGRHETLLNQGWVLCFLGPTSYKFYYTMILFAIMFFFFHFSKKVLLLSTLVLCSSIKVVDTNI 1317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5146g00009 1317 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 385 621 IPR003439 GO:0005524
Vium5146g00009 1317 MobiDBLite consensus disorder prediction 627 645 - -
Vium5146g00009 1317 CDD ABC_MTABC3_MDL1_MDL2 1037 1265 - -
Vium5146g00009 1317 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 716 1002 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium5146g00009 1317 FunFam ABC transporter B family member 1 695 1003 - -
Vium5146g00009 1317 Pfam ABC transporter 1056 1205 IPR003439 GO:0005524
Vium5146g00009 1317 CDD ABC_MTABC3_MDL1_MDL2 385 623 - -
Vium5146g00009 1317 CDD ABC_6TM_Pgp_ABCB1_D1_like 62 358 - -
Vium5146g00009 1317 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 374 623 IPR027417 -
Vium5146g00009 1317 Gene3D ABC transporter type 1, transmembrane domain 695 1004 IPR036640 GO:0005524|GO:0016020
Vium5146g00009 1317 Gene3D ABC transporter type 1, transmembrane domain 1005 1026 IPR036640 GO:0005524|GO:0016020
Vium5146g00009 1317 CDD ABC_6TM_Pgp_ABCB1_D2_like 705 1020 - -
Vium5146g00009 1317 FunFam ABC transporter B family member 9 49 381 - -
Vium5146g00009 1317 MobiDBLite consensus disorder prediction 8 42 - -
Vium5146g00009 1317 MobiDBLite consensus disorder prediction 623 645 - -
Vium5146g00009 1317 Gene3D ABC transporter type 1, transmembrane domain 49 640 IPR036640 GO:0005524|GO:0016020
Vium5146g00009 1317 SMART AAA_5 1064 1257 IPR003593 GO:0016887
Vium5146g00009 1317 SMART AAA_5 412 604 IPR003593 GO:0016887
Vium5146g00009 1317 Gene3D - 375 624 IPR027417 -
Vium5146g00009 1317 Gene3D - 1027 1265 IPR027417 -
Vium5146g00009 1317 FunFam ABC transporter B family member 1 1027 1270 - -
Vium5146g00009 1317 FunFam ABC transporter B family member 1 375 624 - -
Vium5146g00009 1317 Pfam ABC transporter transmembrane region 715 987 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium5146g00009 1317 Pfam ABC transporter transmembrane region 63 336 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium5146g00009 1317 Pfam ABC transporter 404 552 IPR003439 GO:0005524
Vium5146g00009 1317 MobiDBLite consensus disorder prediction 1 42 - -
Vium5146g00009 1317 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1031 1265 IPR027417 -
Vium5146g00009 1317 SUPERFAMILY ABC transporter transmembrane region 702 1021 IPR036640 GO:0005524|GO:0016020
Vium5146g00009 1317 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 63 350 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium5146g00009 1317 SUPERFAMILY ABC transporter transmembrane region 44 369 IPR036640 GO:0005524|GO:0016020
Vium5146g00009 1317 PANTHER ABC TRANSPORTER B FAMILY 25 628 IPR039421 -
Vium5146g00009 1317 ProSitePatterns ABC transporters family signature. 1177 1191 IPR017871 GO:0005524|GO:0016887
Vium5146g00009 1317 ProSitePatterns ABC transporters family signature. 524 538 IPR017871 GO:0005524|GO:0016887
Vium5146g00009 1317 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1037 1274 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5146g00009 Vium-Chr5146 49287 55007 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5146g00009 63 623 Calmodulin-binding Proteins AT2G36910 38.908 3.76e-116 392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5146g00009 K05658 - gmx:100802547 2127.83