Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5144g00005 TGGCCATGGTACTGCTTATGGATTTTTCTTCCTCTTCCGAGTACAGCCTCTGGAAGTGCAGAATATGAAACTTCAGGATCCAGTGGGACTGCTACTGCTACTGGCCTTACAGGCATCATGGTGGCAAAATCAATGGAGTTCACATATCAAGAACTGGCAAAGGCTACAAATAACTTCAGCTTGGAGAATAAAATTGGTCAAGGTGGATTTGGAGCTGTGTATTATGCAGAATTGAGAGGCGAGAAAACTGCAATTAAAAAGATGGACGTGCAAGCATCCACTGAATTTCTTTGTGAGTTGAAGGTCTTAACTCACGTTCATCACTTGAATCTGGTGCGTTTGATTGGATATTGCGTTGAAGGATCCCTTTTCCTTGTGTATGAACATATTGACAACGGAAACTTAGGCCAATATTTGCATGGTACAGGGAAAGATCCTTTGACATGGTCTAGCCGAGTGCAAATTGCTCTAGATTCAGCAAGAGGCCTTGAATATATTCACGAGCACACTGTACCAGTGTATATCCATCGTGATGTAAAATCTGCAAATATATTAATAGACAAAAACTTCCGTGGAAAGGTAGCAGATTTTGGCTTGACTAAACTTATTGAAGTTGGAAGCTCCACACTTCACACTCGTCTTGTGGGAACATTTGGATACATGCCACCAGAATATGCTCAATATGGTGACGTCTCTCCAAAAGTAGATGTGTACGCTTTTGGAGTGGTTCTTTATGAACTGATTTCTGCAAAGAATGCTGTTCTGAAAACAGGTGAATGTGTTGCTGAATCCAAGGGTCTTGTAGCTTTGTTTGAAGAAGCACTCGATCAGAGTAATCCTTCCGAAGCTATTCGCAAACTGGTGGATCCCAGGCTTGGAGAAAACTATCCAATTGATTCAGTTCTCAAGATTGCGCAACTTGGGAGAGCTTGTACAAGGGATAATCCACTACTACGCCCAAGTATGAGATCTATAGTTGTTGCTCTTATGACACTTTCATCTCCTATCGAGGATTTCGACGATGAAACTGCTTCCTACGAAAATCAAACTCTCATAAATCTACTGTCTGTAAGATGA 1077 0.415 WPWYCLWIFLPLPSTASGSAEYETSGSSGTATATGLTGIMVAKSMEFTYQELAKATNNFSLENKIGQGGFGAVYYAELRGEKTAIKKMDVQASTEFLCELKVLTHVHHLNLVRLIGYCVEGSLFLVYEHIDNGNLGQYLHGTGKDPLTWSSRVQIALDSARGLEYIHEHTVPVYIHRDVKSANILIDKNFRGKVADFGLTKLIEVGSSTLHTRLVGTFGYMPPEYAQYGDVSPKVDVYAFGVVLYELISAKNAVLKTGECVAESKGLVALFEEALDQSNPSEAIRKLVDPRLGENYPIDSVLKIAQLGRACTRDNPLLRPSMRSIVVALMTLSSPIEDFDDETASYENQTLINLLSVR 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5144g00005 358 FunFam PTI1-like tyrosine-protein kinase 3 130 343 - -
Vium5144g00005 358 Gene3D Transferase(Phosphotransferase) domain 1 130 351 - -
Vium5144g00005 358 Pfam Protein tyrosine and serine/threonine kinase 60 327 IPR001245 GO:0004672|GO:0006468
Vium5144g00005 358 PIRSF ILK 20 342 - -
Vium5144g00005 358 SUPERFAMILY Protein kinase-like (PK-like) 40 329 IPR011009 -
Vium5144g00005 358 ProSitePatterns Serine/Threonine protein kinases active-site signature. 174 186 IPR008271 GO:0004672|GO:0006468
Vium5144g00005 358 SMART serkin_6 59 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5144g00005 358 ProSiteProfiles Protein kinase domain profile. 59 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5144g00005 358 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 23 341 IPR044812 GO:0019199|GO:0045087
Vium5144g00005 358 FunFam LysM receptor kinase 2 38 129 - -
Vium5144g00005 358 Gene3D Phosphorylase Kinase; domain 1 39 129 - -
Vium5144g00005 358 ProSitePatterns Protein kinases ATP-binding region signature. 65 87 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5144g00005 Vium-Chr5144 29372 32022 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5144g00005 10 358 Receptor kinase-like Gene Family AT3G21630 64.387 3.83e-160 461
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Vium5144g00005 PK_Tyr_Ser-Thr 1.2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5144g00005 - K13429 vum:124840042 706.827