Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5144g00003 ATGTTCCTCTTATTGATCACTGATCCAATGGAACTCAGAAAAGGGTTACTGCTGTTATTTTTGTTGCTGGAGTATGTTTGTTGCAATGTTGAAGCAAAGTGTTTGAAGGGATGTGATTTAGCTTTAGCTTCCTATTATGTGAGTAGAGGGTTGGCCTTGGATGATATAACACACCTGATGAAATCAAGTTTTGTGTCCAATTCTGACGATATAATAAGCTACAATAAAGACAAAACATTCAATAAAAATATCTTCTTCTTTGACAGAATCAACGTTCCATTTCCCTGTGATTGTATCCATGATGAGTTTCTGGGGCATGTGTTTGAGTACTCAGCTGCTGAAGGTGACACCTATGATTCGATTGCCAAAGTGAAATATGCCGATCTCACCACTGTTGAGCTTTTGAGGAGATTCAACAGTTATGGCCAAAATGGTATACCAAAAAATGCCAAGGTTAATGTCACGGTCAATTGTTCTTGTGGGAACAGCCAGGTTTCACAAGAATATGGGTTGTTTATTACCTATCCACTTAGGCCTGATAATAATTTGCATGATATTGCGAACGAGGCTCATCTTGATGCACAGTTGCTGCAGAATTACAATCCTGGAGTCAATTTCAGCAAAGAGAGTGGGATTGTTTTCATTCCAGGAAGAGATCAATTTGGAGACTATGTTCCCTTGCACCCTAGAAAAACAGGTCTAGCTACGGGTGCTGTTGCTGGAATATCCATAGCAGGAATATGCGGTCTTCTATTATTAGTAATATGCATATATGTTAAATTCTTCAAGAAGATGGAAGGAGAGAAACCTAAATTGCCAACAGAAAAATCTACGGCGTTTTCAATTCAAGATGCCTCTGGAAGTGCAGAATATGAAACTTCAGGATCCAGTGGGACTGCTACTGCTACTGGCCTTACAGGCATCATGGTGGCAAAATCAATGGAGTTCACATATCAAGAACTGGCAAAGGCTACAAATAACTTCAGCTTGGAGAATAAAATTGGTCAAGGTGGATTTGGAGCTGTGTATTATGCAGAATTGAGAGGCGAGAAAACTGCAATTAAAAAGATGGACGTGCAAGCATCCACTGAATTTCTTTGTGAGTTGAAGGTCTTAACTCACGTTCATCACTTGAATCTGGTGCGTTTGATTGGATATTGCGTTGAAGGATCCCTTTTCCTTGTGTATGAACATATTGACAACGGAAACTTAGGCCAATATTTGCATGGTACAGGGAAAGATCCTTTGACATGGTCTAGCCGAGTGCAAATTGCTCTAGATTCAGCAAGAGGCCTTGAATATATTCACGAGCACACAGTGCCTGTATATATTCATCGTGACATAAAGTCAGCAAATATATTAATAGACAAAAACTTCCGTGGAAAGGTAGCAGATTTTGGCTTGACTAAACTTATTGAAGTTGGAAGCTCCACACTTCACACTCGTCTTGTGGGAACATTTGGATACATGCCACCAGAATATGCTCAATATGGTGACGTCTCTCCAAAAGTAGATGTGTACGCTTTTGGAGTGGTTCTTTATGAACTGATTTCTGCAAAGAATGCTGTTCTGAAAACAGGTGAATGTGTTGCTGAATCCAAGGGTCTTGTAGCTTTGTTTGAAGAAGCACTCGATCAGAGTAATCCTTCCGAAGCTATTCGCAAACTGGTGGATCCCAGGCTTGGAGAAAACTATCCAATTGATTCAGTTCTCAAGATTGCGCAACTTGGGAGAGCTTGTACAAGGGATAATCCACTACTACGCCCAAGTATGAGATCTATAGTTGTTGCTCTTATGACACTTTCATCTCCTATCGAGGATTTCGACGATGAAACTGCTTCCTACGAAAATCAAACTCTCATAAATCTACTGTCTGTAAGATGA 1884 0.4013 MFLLLITDPMELRKGLLLLFLLLEYVCCNVEAKCLKGCDLALASYYVSRGLALDDITHLMKSSFVSNSDDIISYNKDKTFNKNIFFFDRINVPFPCDCIHDEFLGHVFEYSAAEGDTYDSIAKVKYADLTTVELLRRFNSYGQNGIPKNAKVNVTVNCSCGNSQVSQEYGLFITYPLRPDNNLHDIANEAHLDAQLLQNYNPGVNFSKESGIVFIPGRDQFGDYVPLHPRKTGLATGAVAGISIAGICGLLLLVICIYVKFFKKMEGEKPKLPTEKSTAFSIQDASGSAEYETSGSSGTATATGLTGIMVAKSMEFTYQELAKATNNFSLENKIGQGGFGAVYYAELRGEKTAIKKMDVQASTEFLCELKVLTHVHHLNLVRLIGYCVEGSLFLVYEHIDNGNLGQYLHGTGKDPLTWSSRVQIALDSARGLEYIHEHTVPVYIHRDIKSANILIDKNFRGKVADFGLTKLIEVGSSTLHTRLVGTFGYMPPEYAQYGDVSPKVDVYAFGVVLYELISAKNAVLKTGECVAESKGLVALFEEALDQSNPSEAIRKLVDPRLGENYPIDSVLKIAQLGRACTRDNPLLRPSMRSIVVALMTLSSPIEDFDDETASYENQTLINLLSVR 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5144g00003 627 FunFam PTI1-like tyrosine-protein kinase 3 399 612 - -
Vium5144g00003 627 ProSitePatterns Serine/Threonine protein kinases active-site signature. 443 455 IPR008271 GO:0004672|GO:0006468
Vium5144g00003 627 SUPERFAMILY Protein kinase-like (PK-like) 309 598 IPR011009 -
Vium5144g00003 627 Pfam Protein tyrosine and serine/threonine kinase 329 596 IPR001245 GO:0004672|GO:0006468
Vium5144g00003 627 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 16 610 IPR044812 GO:0019199|GO:0045087
Vium5144g00003 627 ProSitePatterns Protein kinases ATP-binding region signature. 334 356 IPR017441 GO:0005524
Vium5144g00003 627 FunFam LysM receptor kinase 2 307 398 - -
Vium5144g00003 627 Gene3D Phosphorylase Kinase; domain 1 308 398 - -
Vium5144g00003 627 SMART serkin_6 328 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5144g00003 627 ProSiteProfiles Protein kinase domain profile. 328 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5144g00003 627 Gene3D Transferase(Phosphotransferase) domain 1 399 620 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5144g00003 Vium-Chr5144 23331 27709 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5144g00003 10 627 Receptor kinase-like Gene Family AT3G21630 54.647 0.0 663
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Vium5144g00003 PK_Tyr_Ser-Thr 4.2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5144g00003 - K13429 gmx:100776847 1024.23