Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5144g00002 ATGGAGAACAGATTCAGACTATCAGTTTTCTTCATGTTATGGGCTTCTATGGTGCATAGTGCAGAATCCGAGTGTAAGAGGGATTGTGATTTAGCTCTAGCTTCCTACAATCTAACAGGAGGTGATTTGACATATGTATCAAAGCTTATGAAATCTGAGTTTGTTTCAAAACCTGAAGATATTCTCCCCTACAACAATGAAACCATAAAAAACAAAGACCAGGTGCAAGCCTTTACCAGGGTGAACGTTCCATTCCCTTGCGATTGCATTGGAGATTTTCTAGGTCATATATTCAAATATGACGTTGCATCAGGTGACACTTACATGTCCATTGCCACTCAGAATTATTCCGATTTGACCACTGTTCAGTTGTTGCAGAGCTTCAACTCATATTCACCAACTGATCTTCCTGATACTGGGACTCTTGATGTCTTCGTTAACTGTTCCTGTGGGAATAGTGACATTTCCAAGGATTATGGTTTGTTCATCACATACCCTCTTAGACCTGAGGATTCTTTGCAGTCAATTGCCAACGAGACTGGGATAGAGAGTGACTTGCTGCTTAAGTACAACCCGGGTGTAAATTTTAGCCAAGGGAGTGGTTTGGTTTATATTCCAGGGAAAGACCAAAATGGTGGCTATGTGCCCCTTCATCAAAGCACTGGAGGCCTTGCGCTAAGAGTTATCGCTGGAATATCTGCTGGAGTAGTAACGGCACTTCTGCTATTGGCATTCTGTGGGTATGTTACATATTACCGAAGAAAGAAGGTATGGAAGAGGAATTTGCTCACAGATGAATTCATGATGAACTCGGCCAGAGTTATGAATGATGAAGCCTCTGGTGTTCCCGATGCAGAAGTTGGTACCAACACCATTAGGGTGGACAATTCAGCAGAGTTTTCATATGAAGAACTAGCCAATGCTACAAATAACTTCAGTCTGGCTAACAAAATTGGTCAAGGTGGTTTTGGGGAAGTCTATTACGCAGAGCTTAATGGAGAGAAAGCTGCAGTTAAAAAGATGGACATGCAAGCAACAAGAGAATTTCTAGCTGAACTGAAAGTATTGACACGTGTTCATCACTTGAACCTGGTGCGTTTGATTGGATATTGTATTGAGAGCTCCCTTTTCCTTGTTTATGAATACATTGAGAATGGCAACTTAGGACAACATCTACGTAGATCAGAATTTGATCCTTTGCCATGGTCTGCCCGAGTTCAAATTGCTCTGGATTCTGCCAGAGGTCTGCAGTACATTCATGAGCATACTGTGCCTGTATATATCCATCGCGACATAAAGTCAGAAAACATTTTGATAGACAGAAAGTTATGTGCTAAGGTTGCAGACTTTGGTTTAACCAAGTTGATTGATGTTGGAAGTTCATCCCTTCTCACAGCTAACATGAAGGGCACATTTGGTTACATGCCACCGGAGTACGCATATGGCAACGTTTCTCCCAAAATCGATGTCTATGCTTTTGGTGTTGTTCTTTATGAACTAATTTCTGCAAAAGAAGCATTGATCACGGGTGGTGTACACGGTGCTCAATTAAAGGGCCTTGTGTCTTTGTTTGATGCAGCTTTTGATCAGCAAGATCCCACAGAAGGTCTTAAGAAACTGGTGGATCCTAGGTTAGGAGATAACTACCCAATCGATTCAGTTTGCAAGATGGCACTACTTGCCAAAGCATGCACAGAGAGCGATCCACAACAACGTCCAAATATGAGTTCTGTTGTGGTTACTCTCACAGCACTTACTTCAAATAGTGAGGATTGGGATATTGCTTCCATCATTGAAAATCCAGCTCTAGCAAATCTAATGTCTGGGAAATAG 1833 0.4179 MENRFRLSVFFMLWASMVHSAESECKRDCDLALASYNLTGGDLTYVSKLMKSEFVSKPEDILPYNNETIKNKDQVQAFTRVNVPFPCDCIGDFLGHIFKYDVASGDTYMSIATQNYSDLTTVQLLQSFNSYSPTDLPDTGTLDVFVNCSCGNSDISKDYGLFITYPLRPEDSLQSIANETGIESDLLLKYNPGVNFSQGSGLVYIPGKDQNGGYVPLHQSTGGLALRVIAGISAGVVTALLLLAFCGYVTYYRRKKVWKRNLLTDEFMMNSARVMNDEASGVPDAEVGTNTIRVDNSAEFSYEELANATNNFSLANKIGQGGFGEVYYAELNGEKAAVKKMDMQATREFLAELKVLTRVHHLNLVRLIGYCIESSLFLVYEYIENGNLGQHLRRSEFDPLPWSARVQIALDSARGLQYIHEHTVPVYIHRDIKSENILIDRKLCAKVADFGLTKLIDVGSSSLLTANMKGTFGYMPPEYAYGNVSPKIDVYAFGVVLYELISAKEALITGGVHGAQLKGLVSLFDAAFDQQDPTEGLKKLVDPRLGDNYPIDSVCKMALLAKACTESDPQQRPNMSSVVVTLTALTSNSEDWDIASIIENPALANLMSGK 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5144g00002 610 Pfam LysM domain 168 196 IPR018392 -
Vium5144g00002 610 Pfam LysM domain 100 136 IPR018392 -
Vium5144g00002 610 FunFam PTI1-like tyrosine-protein kinase 3 383 596 - -
Vium5144g00002 610 Gene3D Transferase(Phosphotransferase) domain 1 383 600 - -
Vium5144g00002 610 ProSitePatterns Protein kinases ATP-binding region signature. 318 340 IPR017441 GO:0005524
Vium5144g00002 610 ProSitePatterns Serine/Threonine protein kinases active-site signature. 427 439 IPR008271 GO:0004672|GO:0006468
Vium5144g00002 610 SMART serkin_6 312 585 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5144g00002 610 Gene3D Phosphorylase Kinase; domain 1 284 382 - -
Vium5144g00002 610 FunFam LysM receptor kinase 2 291 382 - -
Vium5144g00002 610 Pfam Protein tyrosine and serine/threonine kinase 314 581 IPR001245 GO:0004672|GO:0006468
Vium5144g00002 610 CDD STKc_IRAK 318 585 - -
Vium5144g00002 610 SUPERFAMILY Protein kinase-like (PK-like) 291 582 IPR011009 -
Vium5144g00002 610 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 7 595 IPR044812 GO:0019199|GO:0045087
Vium5144g00002 610 ProSiteProfiles Protein kinase domain profile. 312 585 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5144g00002 Vium-Chr5144 17362 21653 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5144g00002 1 610 Receptor kinase-like Gene Family AT3G21630 54.720 0.0 661
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Vium5144g00002 PK_Tyr_Ser-Thr 6.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5144g00002 - K13429 gmx:100803042 999.193