Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5142g00007 CATTCCCTCACCACCCTCTTCTCCCTCCGCATCCCCCAAAACGACATCGTTTCCCTCCTCACTACCAACCCCTCCCTCCTCCACCATTCCTTCCACCACACCCTCCAATCCCGTCTCCCCCATCTCCAAACGCGCTTCCCCACACTCTCCCCTTCCACCCTCCTCAACCTTCTCCTCTCTTCCACAAAGTTACATCTCGACCCGCTCCAACTCTCACCCAAGCTCAACGCGCTCAAAACCGATTTCGCGTTTTCCGACGCCACCGTGGCCAGCATTCTGGAAGGGTTCCCCGACGTGGTTGTCACGAGCGAGAACGAAATCGCGAGCGTGATAGATTTTCTCGCGGGGTTCGGAATTCCCCGGGACGAGATTGATCTCGTTGTCCGTTCCTTTCCTAGGGTTTTGGCGCTCGGTGTTGAGCAGAGGCTGATGCCGTTGTTTCGGGAAATCAAGGAGCTAGGGTTTTCCAATCGTGAGATGAGGAGCGAGATCTCGCGGGACCCGAGGATTCTGGGGATGGAAATTGGAGAGCTTACGCGGTGTTTGAGACTGATAGAGAGTTTGAAATGCAGGGAAAGTATCAAAGAGAGGGTTATAGGTTCGGGTCTGATGAGAGTGTGTTTTGAGGTGAAATTAAGAGTGGATTGTTTGTGTGGGTATGGTTTGACTCGAATGGATGCTCTGAAGGTTATTTGGAAGGAGCCTAGGGTGATTTGTTACGAGGTTGGGGATGTTGAAAGGAAGGTTGAGTTTCTTGTGCAGAGGATGAAGTGTAGTGTAGAGTGTTTGGCTGAGGTGCCTAAATATTTGGGTGTGAATTTTGAGAAGCAGATTGTGGCTAGGTACAGTGTGGTAGAGTGTTTGAGGGGGAAAGGTGCCATTGGGTTTGAGTTTGGGTTGAAGGATTTGTTTATGCCTTCTAGGCTTAGGTTCTATAATCTTTATGTGAAGCCATACCCGGAGTGTGAAAAGATCTATGGAAGGTTTTCTGGGTGTGGTGTTCAAGTTAAGACGAAGCATCCCGCTGGACTGTGGAAACTTTTTAAACCGCAGAAGTTTGCTGAAATGGATGAAGATGTGGAGAGCGTGAGGTCATTCATGGAGTCTCTGGTTTAG 1116 0.5 HSLTTLFSLRIPQNDIVSLLTTNPSLLHHSFHHTLQSRLPHLQTRFPTLSPSTLLNLLLSSTKLHLDPLQLSPKLNALKTDFAFSDATVASILEGFPDVVVTSENEIASVIDFLAGFGIPRDEIDLVVRSFPRVLALGVEQRLMPLFREIKELGFSNREMRSEISRDPRILGMEIGELTRCLRLIESLKCRESIKERVIGSGLMRVCFEVKLRVDCLCGYGLTRMDALKVIWKEPRVICYEVGDVERKVEFLVQRMKCSVECLAEVPKYLGVNFEKQIVARYSVVECLRGKGAIGFEFGLKDLFMPSRLRFYNLYVKPYPECEKIYGRFSGCGVQVKTKHPAGLWKLFKPQKFAEMDEDVESVRSFMESLV 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5142g00007 371 PANTHER CGI-12 PROTEIN-RELATED 64 319 IPR003690 GO:0003690|GO:0006355
Vium5142g00007 371 SMART mt_12 90 120 IPR003690 GO:0003690|GO:0006355
Vium5142g00007 371 SMART mt_12 125 156 IPR003690 GO:0003690|GO:0006355
Vium5142g00007 371 SMART mt_12 260 294 IPR003690 GO:0003690|GO:0006355
Vium5142g00007 371 SMART mt_12 161 191 IPR003690 GO:0003690|GO:0006355
Vium5142g00007 371 SMART mt_12 228 259 IPR003690 GO:0003690|GO:0006355
Vium5142g00007 371 Gene3D Transcription termination factor 3, mitochondrial 99 329 IPR038538 -
Vium5142g00007 371 Pfam mTERF 212 304 IPR003690 GO:0003690|GO:0006355
Vium5142g00007 371 Pfam mTERF 6 178 IPR003690 GO:0003690|GO:0006355
Vium5142g00007 371 FunFam Transcription termination factor MTERF15 mitochondrial 104 326 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vium5142g00007 mTERF 3.8e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5142g00007 - - vum:124840038 714.531