Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5142g00004 ATGGAACACAAAATGTTACCTGCCGTTGGATCTGTTGTCCCTCGTGGTGCTTTTGCAGTCTTGCTCCTGCTGCTCTTCTTTTTCTCCTCATTCAGTTCTACAGAAGCCTATGATCCGCTTGATCCAACTGGCAATATAACAATCAAATGGGATGTCATTAGCTGGACTCCAGATGGCTATCTTGCTGTTGTTACAATGTACAACTTTCAACAATATCGCCACATTCAGTCCCCTGGATGGTCATTAGGGTGGACATGGGCTAAAAAAGAAGTAATTTGGAACATGATGGGAAGCCAAACCACAGAGCAAGGGGACTGTTCAAAGTTCAAAGCAGGTATTCCTCATTGTTGTAAGAAGGATCCAACAGTGGTGGATTTACTGCCAGGAACTCCTTACAACCAGCAGATTGCAAATTGTTGCAAAGGGGGTGTCCTAAATTCATGGGGTCAGGACCCCAGTAGTGCAGTAAGTTCTTTCCAGATTAGTGTTGGTTCTGCTGGAACCACAAACAGAACGGTCAAACTGCCTAAAAATTTTACCCTCAAAGCACCAGGACCTGGCTACACTTGTGGTCCTGCAAAGGTTGTGAAACCAACTACATTTATTACCAGTGACAAGAGGAGAACCACCCAAGCCATGATGACTTGGAATATTACCTGCACTTATTCTCAATTCCTGGCTCAAAAGACTCCAAGTTGTTGTGTTTCCCTCTCATCCTTCTACAATGACACAGTAGTAAACTGCCCAACCTGCACCTGTGGCTGCCAAAACAAAACAGAATCTGGCAGCTGCGTAGAACCAAATTCACCGCATTTAGCTTCAGTTGTATCAGCATCAGGTAAAGCTGCAAACACACCTCTAGTTCAGTGCACCAGCCACATGTGTCCTATTCGAGTGCATTGGCATGTGAAACTCAATTACAAAGAGTACTGGAGGGTGAAGGTCACAATTACTAATTTCAACTACAGAATGAACTACTCTCAGTGGAACCTTGTTGTGCAGCATCCCAATTTAGATAATATTACCCAGCTCTTCAGTTTTCAGTACAAGTCACTTACACCCTATGAGGGCTTGAATGATACAAGTATGCTGTGGGGAATCAAGTTCTACAATGATTTTCTTTCTTCAGCTGGACCTCTTGGTAACGTTCAATCAGAAATCTTACTTAGAAAAGACAAATCAACCTTCACATTTGATAAGGGATGGGCATTCCCCAGAAGGATTTATTTCAACGGGGATAACTGTGTTATGCCTCCTCCAGATGCCTACCCTTGGCTGCCAAATGCAAGTCCTAAACTAGTTTTCTCTGTGCTAAGTACACTCATAGCCACTTTAGCTTCTTTGTTAAGTGTTATTTAA 1359 0.4312 MEHKMLPAVGSVVPRGAFAVLLLLLFFFSSFSSTEAYDPLDPTGNITIKWDVISWTPDGYLAVVTMYNFQQYRHIQSPGWSLGWTWAKKEVIWNMMGSQTTEQGDCSKFKAGIPHCCKKDPTVVDLLPGTPYNQQIANCCKGGVLNSWGQDPSSAVSSFQISVGSAGTTNRTVKLPKNFTLKAPGPGYTCGPAKVVKPTTFITSDKRRTTQAMMTWNITCTYSQFLAQKTPSCCVSLSSFYNDTVVNCPTCTCGCQNKTESGSCVEPNSPHLASVVSASGKAANTPLVQCTSHMCPIRVHWHVKLNYKEYWRVKVTITNFNYRMNYSQWNLVVQHPNLDNITQLFSFQYKSLTPYEGLNDTSMLWGIKFYNDFLSSAGPLGNVQSEILLRKDKSTFTFDKGWAFPRRIYFNGDNCVMPPPDAYPWLPNASPKLVFSVLSTLIATLASLLSVI 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5142g00004 452 PIRSF COBRA 11 452 IPR006918 GO:0010215|GO:0016020
Vium5142g00004 452 PANTHER PROTEIN COBRA 24 441 IPR006918 GO:0010215|GO:0016020
Vium5142g00004 452 Pfam COBRA-like protein 60 223 IPR006918 GO:0010215|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5142g00004 Vium-Chr5142 28676 32181 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5142g00004 48 439 COBRA Gene Family AT5G60920 80.000 0.0 698
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5142g00004 - - gmx:100815779 872.463