Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5142g00003 ATGGAATCTAACAGTGGTAAACAGCAGCAAAAGGACACATTTGGATGCTTCAAGTTGGTTGCCTTAATTGCTCTATGCTTTGTTTTAGTTTCTCCAGCAGAATCATTTGATCCATTGGATCCAACTGGGAATGTGACAATAAGATGGGATATCATGTCCTGGACATCAGATGGATATTTGGCTACTGTGACATTGTTTAACTTCCAATTGTACCGCAATATTATGAATCCTGGGTGGACTCTGGGGTGGACATGGGCAAAGAAAGAAATAATCTGGGCCATGATGGGGGCTCAAGCCACAGAGCAAGGAAACTGTGCCAAGTTCAAGTTGAAGATTCCTCATAGCTGCAAGAGGGACCCTCAAGTGGTTGACTTGCTACCAGGAGCTCCTTTCAACATGCAGTTCACCAATTGCTGCAGGGGTGGTGTGCTTACATCTTGGGGACAGAACCCTTCAGGTGCAGTATCTTCATTTCAGATAGGTGTGGGGCTCTCTGGCACCTCCAACAAGACAGTCAAATTGCCTAAGAACTTCAAATTGTTGGGACCTGGACCAGGATATTCTTGTGGCCCTGCTAAGGTTGTTCCATCCACTGCAATCCTCACAGATGATCGAAGGCGAAAAATGCAGGCATTGATGTCTTGGAATGTGACGTGCACTTATTCACAGTTTCTTGCCTCCAAGAACCCAAGCTGTTGTGTTTCTTTGTCATCTTTCTACAGTGACAAAATCACAGGTTGTCCACCTTGTGCTTGTGGGTGCCAGAATAACGATACCTGTGTCACGAGAGACTCAAAGATCCTGCAAGAGAATGTCACCTCAACTCATCGAAAATCAGACATCACACCAAAACCATTGTTACAATGCACACACCACCTGTGTCATGTCCGGGTGCACTGGCATTTGAAAGACAACTATCAGGACTATTGGCGAGTCAAGATTGCCATTATCAACTTCAACTATCGATTGAATTTCACCGATTGGTCTCTTGTTGTGCAGCACCCCAATCTCAATAATGTAACCCAAGTCTATAGCTTTGAATACATGCCACTCCTTCCCTATGAGTCCATAAATGACACAGGCATGTTCTATGGTTTGAAATATTACAATGATCTGTTGATGGAAGCTGGGCCTAAAGGGAATGTTCAGTCTGAGGTGCTCATGAAGAAGGATAAGAACACATTTACTCTCAAGCAGGGTTGGGCATTTCCTAGAAGGGTCTACTTTAATGGTGATGAATGCATGCTGCCACCTCCTGATTCATATCCTATGTTGCCAAACTCTGCCCACAAACCACCAACAACTATTACATTCATTGCAACCTATGTGGTTTTCACATTATTTTTTCATTTGATTGTAACACATTTTTGA 1371 0.4362 MESNSGKQQQKDTFGCFKLVALIALCFVLVSPAESFDPLDPTGNVTIRWDIMSWTSDGYLATVTLFNFQLYRNIMNPGWTLGWTWAKKEIIWAMMGAQATEQGNCAKFKLKIPHSCKRDPQVVDLLPGAPFNMQFTNCCRGGVLTSWGQNPSGAVSSFQIGVGLSGTSNKTVKLPKNFKLLGPGPGYSCGPAKVVPSTAILTDDRRRKMQALMSWNVTCTYSQFLASKNPSCCVSLSSFYSDKITGCPPCACGCQNNDTCVTRDSKILQENVTSTHRKSDITPKPLLQCTHHLCHVRVHWHLKDNYQDYWRVKIAIINFNYRLNFTDWSLVVQHPNLNNVTQVYSFEYMPLLPYESINDTGMFYGLKYYNDLLMEAGPKGNVQSEVLMKKDKNTFTLKQGWAFPRRVYFNGDECMLPPPDSYPMLPNSAHKPPTTITFIATYVVFTLFFHLIVTHF 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5142g00003 456 PANTHER PROTEIN COBRA 23 441 IPR006918 GO:0010215|GO:0016020
Vium5142g00003 456 PIRSF COBRA 8 454 IPR006918 GO:0010215|GO:0016020
Vium5142g00003 456 Pfam COBRA-like protein 59 222 IPR006918 GO:0010215|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5142g00003 Vium-Chr5142 25886 28415 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5142g00003 17 450 COBRA Gene Family AT3G02210 57.208 0.0 567
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5142g00003 - - gmx:100813134 919.072