Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5139g00002 ATGCAAGGGCAGAGAGGTACAATTGGTTCCTTGCAAGAAACCATAGAATTTGATACATCAAGTACTGCTGCAGTTGATCAACATATTTTCTGGAACAATATGCGAAATCCCGCAGAAAACCATTTTGCACTTCCCCCCAGTGATTTGAACCCGTCTTACGCAAATCCTATAAACCATGAATGGCAGAACCTAAGTGGATGGAGCTTAGGTGAGCCAAGTTCCAGCAATACTCAGAATGAGGTTACTAACAATGAGCAGAAAGGAGAGCTAGGATTATCATCTTCAATAAGTTCTGGTGCTATAGCTGGTCCAAGACTTGAAGAAAGGCGCTTTGAACCAAACAATACTTTTCCGTTGGACAATGTCAATACAAGTTCCATGTATATGCGCAGCTCCAATTCTCACTTGGTGCCTCAGAATCTCAACCTAAATGCAAGCTTAGCAGATAGCGGCACTGATAATGGCTTTCGTGTGGAACATCCTCCTAACTTGAACAAGTCTAGTGGACCGGTAAACGAGCATATTCAACCTTCAATTGGTTCTAGTCCGTTTCTGCTTCCTTCTGGCACTAATGGCTTTTTGGTTGAGGATACTGATGGTAGGCCTGGTTGTTCTCTGGACACACGCCGTGTATCATGTAAAAGAAAGGCTGTTGAACGAAGTGTAGGGCAATCTTCAGGTGGTGGAAGTTCTAGCTATAGTCAGCATACAGATGGTAATACTTGGAACACTCTTCCTACTCAGGATTATGGAGGAAGCAGTTTTAACAGATCTGCCTCAACAGAACAGGTGAATGCGAGACTCGGTCTGAGTACTGGGGATGGAGCCGCTGAGAGCATTCCTTGGTCAAATGTTGCAGGAAGCTCAGAAAGCTTCCACAGAAATTTTCGTGTGAGGATAAATCCTTCAAGTCAACAAATTTCGGTTCCACCCCCTGCAATCTCAAGTGGGAGTGTTCTTAGGAATTCTGGCGTCTCTTCGTCCTCTCCAATGTTGCAACGGTTTCATTCTGTTGATAATTCTCTGGACTTGAGGTCAGCACCACCTGTCGTTGATACTATGGTTCCCCAAAGCCAGCCACTTGTTATTCATGTTCCAGCTTTACCAAGGAATGTGCATCCATTCAGGTGGAATGGAGGTTCCAGCTCAACCAACAATCATCCTTCAAACACAGTCATATGTGCAGATAGAAATAATTTGCCAAACGAGGAAGCAAGTTCAAGAAGTGTGCCGAGAAACATGGTAGAATACCCTATGTTTGTGCCTGCAACCAATTTAAGAAATGTGGTTAGAAATCCGGCTAGAGCTTCAAATAGTGCAAATTTAAGTATCCCAGGAAATGTTGGTTCTTCATCGAGGGCAGGCTCAAATTCAGCTGTCAACCCTCCGTCTGCTCCGGCGTGGGTTTCTCGCCCTAATCCTCAGCAGTATCCTCGCAGGTTGTCCGAGTATGTTCGTCGGTCCTTGTTTTCTCCTGGTTTGGAAGCTGCTGGAAGTTCAAGCAACAATTATGCTTCCTTCCGTGGCCCATCTACTTCATCTGGGGTAAACCCATTTGAGAGGCAAGGTGATAGTGAATTTGGAATTCAGTATTCATTACGATCTTTGGCTGCTGCTGGTGAAGGAAGTAGTAGACTTGTATCTGAGCTCCGCAATGTATTGGGCCTCATGCGTAGGGGTGGGAACCTACGATTTGAGGATGTTATGATCCTCGACCATTCAGTGTTCGCTGGAATTGCTGATATGCATGATCGACACAGGGATATGCGACTTGATGTTGATAACATGTCTTACGAGGAGCTACTTGCTTTGGAAGAACGCATTGGAAATGTGAGTACCGGCTTGAGTGAGGAGACCATATTGAAACACATGAAAAATAAGAAGTATTCAGCTGAACCAGGTTCTCAGCAGGAGGCAGAACCATGTTGTGTTTGTCAGGAGGAGTACAAAGATGGAGATGATTTAGGATCACTGGATTGTGGGCATGATTACCATACCGAATGTATTAAGCAGTGGCTAATGCATAAGAATTTGTGTCCCATTTGTAAGACAACAGGGTTGGCAACATGA 2070 0.4464 MQGQRGTIGSLQETIEFDTSSTAAVDQHIFWNNMRNPAENHFALPPSDLNPSYANPINHEWQNLSGWSLGEPSSSNTQNEVTNNEQKGELGLSSSISSGAIAGPRLEERRFEPNNTFPLDNVNTSSMYMRSSNSHLVPQNLNLNASLADSGTDNGFRVEHPPNLNKSSGPVNEHIQPSIGSSPFLLPSGTNGFLVEDTDGRPGCSLDTRRVSCKRKAVERSVGQSSGGGSSSYSQHTDGNTWNTLPTQDYGGSSFNRSASTEQVNARLGLSTGDGAAESIPWSNVAGSSESFHRNFRVRINPSSQQISVPPPAISSGSVLRNSGVSSSSPMLQRFHSVDNSLDLRSAPPVVDTMVPQSQPLVIHVPALPRNVHPFRWNGGSSSTNNHPSNTVICADRNNLPNEEASSRSVPRNMVEYPMFVPATNLRNVVRNPARASNSANLSIPGNVGSSSRAGSNSAVNPPSAPAWVSRPNPQQYPRRLSEYVRRSLFSPGLEAAGSSSNNYASFRGPSTSSGVNPFERQGDSEFGIQYSLRSLAAAGEGSSRLVSELRNVLGLMRRGGNLRFEDVMILDHSVFAGIADMHDRHRDMRLDVDNMSYEELLALEERIGNVSTGLSEETILKHMKNKKYSAEPGSQQEAEPCCVCQEEYKDGDDLGSLDCGHDYHTECIKQWLMHKNLCPICKTTGLAT 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5139g00002 689 Pfam Ring finger domain 642 683 IPR001841 -
Vium5139g00002 689 ProSiteProfiles Zinc finger RING-type profile. 642 683 IPR001841 -
Vium5139g00002 689 SUPERFAMILY RING/U-box 633 685 - -
Vium5139g00002 689 MobiDBLite consensus disorder prediction 64 97 - -
Vium5139g00002 689 SMART ring_2 642 682 IPR001841 -
Vium5139g00002 689 MobiDBLite consensus disorder prediction 223 258 - -
Vium5139g00002 689 MobiDBLite consensus disorder prediction 437 464 - -
Vium5139g00002 689 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 209 687 IPR045191 GO:0061630
Vium5139g00002 689 MobiDBLite consensus disorder prediction 495 517 - -
Vium5139g00002 689 MobiDBLite consensus disorder prediction 215 258 - -
Vium5139g00002 689 MobiDBLite consensus disorder prediction 145 174 - -
Vium5139g00002 689 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 605 686 IPR013083 -
Vium5139g00002 689 FunFam E3 ubiquitin-protein ligase MBR2 610 687 - -
Vium5139g00002 689 MobiDBLite consensus disorder prediction 437 475 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5139g00002 Vium-Chr5139 2108 10207 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5139g00002 1 689 C3H Transcription Factor Family AT2G15530 33.510 1.11e-89 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5139g00002 - - lja:Lj0g3v0173889.1 947.577