Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5138g00003 ATGGACTTTTTCTCTGAATATGGTGATGCCAACCAGTTCAGGATTCAAGAAGTCATTGGGAAGGGTAGTTATGGTGTTGTCTGTTCAGCCATTGACACTCGCACCGGAGAAAAAGTGGCAATTAAGAAGATTCATGACATCTTCGAGCATATATCTGATGCTGCTCGAATTCTCCGTGAGATAAAGCTGCTCAGACTTCTTCGACATCCTGATATTGTAGAAATAAAACACATTATGCTGCCTCCATCATGGAAGGACTTCAAAGATATCTATGTTGTTTTTGAGCTCATGGAGTCTGATCTTCATCAAGTCATCAAAGCCAATGATGACTTGACAAAAGAACACTATCAGTTTTTCCTTTATCAATTACTTCGAGCATTGAAGTACATTCATAGTGCAAATGTCTATCATCGAGATTTGAAACCAAAGAATATACTGGCAAATGCAAACTGTAAGCTTAAAATCTGTGATTTTGGGTTAGCTAGAGTTGCCTTCAGTGACACGCCAACAACTATATTTTGGACGGATTATGTTGCTACAAGGTGGTATAGAGCTCCAGAGCTATGTGGATCATTTTACTCAAAGTATACACCAGCAATTGATATATGGAGTATAGGTTGTATCTTTGCTGAAGTACTAATGGGAAAGCCACTTTTTCCTGGGAAAAATGTAGTCCACCAATTGGACCTGATGACAGATCTGCTTGGGACACCTTCACTTGATACTATATCACGGGTACGCAATGAGAAAGCAAGGAGATACCTAACTAGCATGAGGAAAAAGCAGCCTGTGCCGTTTTCTCAAAAGTTTCCCAATGCAAACCCTTTAGCACTGCGTCTGCTGGAAAGGTTGTTGGCTTTTGATCCAAAAGATCGGCCTACGGCAGAAGAGGCATTGGCTGATCCTTACTTTAAGGGGCTGGCAAAAGTTGAGAAGGAGCCATCTTGCCATCCTATCACAAAAATGGAATTTGAATTTGAAAGACGAAGAGTAACAAAGGAAGACATTCGAGAACTGATTTTCCGTGAGATTCTAGAGTATCACCCTCAGCTATTGAAAGACTACATGAATGGAAATGAGAGAACCAATTTTCTTTATCCAAGTGCTGTCGATCAATTCAGAAAGCAGTTTGCTCATCTGGAGGAAAATGGTAAAAATGGTCATGTTATGCCACTTGAAAGAAAGCATGTTTCTCTTCCAAGGTCAACCATTGTACATTCAAATTCTAATACAATACACCCAAAAGATCAATCAAACATTGTTGCCTGCAAAAACCGACCAACTGCTGAGGAATGCAACAGGAATTCCAGAGATACAAAAATTCTAGTGCCAAGGTCAATGCAGGGACCACCAAGAATTCCACTAGCAAAACCTGGTAAAGTTGTGGGGCCAGTTGTTCCATACGAGTACGATAACATTGTCAAGGATTCTTATGATCCTAGGTCGTTTATCAGAGGTTCTGTGCTTCCTACTCAACCTGTTCCCCCAGGGTACTATTATCATCAGAGATCCAGCACTGCAAATCAAGAAAGGGCTGCAACAGAAGCTGACAAGAGTGTGCCTTTGCAAGCAAAACAACATGATCAAGAACAATTTGGAATTAATGCCAAGAGGGCACCAGATATAGCTATTAATATTGATACAAATCCCTTTTTTATGACAAGGGCAGGAGTTAACAAGTTAGAGCAAGGTGATCAAATAGTCATAGAGACAAACTTGTTGCAGCCAAAGACATATGGTGGAAGCAGTGCTGCAGCTGGGGCCACTGCTCATAGAAAGGTGGGTCCTGTTCAGTATGGTATGACAAGAATGTTCTAG 1818 0.4092 MDFFSEYGDANQFRIQEVIGKGSYGVVCSAIDTRTGEKVAIKKIHDIFEHISDAARILREIKLLRLLRHPDIVEIKHIMLPPSWKDFKDIYVVFELMESDLHQVIKANDDLTKEHYQFFLYQLLRALKYIHSANVYHRDLKPKNILANANCKLKICDFGLARVAFSDTPTTIFWTDYVATRWYRAPELCGSFYSKYTPAIDIWSIGCIFAEVLMGKPLFPGKNVVHQLDLMTDLLGTPSLDTISRVRNEKARRYLTSMRKKQPVPFSQKFPNANPLALRLLERLLAFDPKDRPTAEEALADPYFKGLAKVEKEPSCHPITKMEFEFERRRVTKEDIRELIFREILEYHPQLLKDYMNGNERTNFLYPSAVDQFRKQFAHLEENGKNGHVMPLERKHVSLPRSTIVHSNSNTIHPKDQSNIVACKNRPTAEECNRNSRDTKILVPRSMQGPPRIPLAKPGKVVGPVVPYEYDNIVKDSYDPRSFIRGSVLPTQPVPPGYYYHQRSSTANQERAATEADKSVPLQAKQHDQEQFGINAKRAPDIAINIDTNPFFMTRAGVNKLEQGDQIVIETNLLQPKTYGGSSAAAGATAHRKVGPVQYGMTRMF 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5138g00003 605 FunFam Mitogen-activated protein kinase 99 327 - -
Vium5138g00003 605 ProSiteProfiles Protein kinase domain profile. 13 304 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5138g00003 605 FunFam Mitogen-activated protein kinase 5 106 - -
Vium5138g00003 605 Gene3D Phosphorylase Kinase; domain 1 28 350 - -
Vium5138g00003 605 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 15 352 - -
Vium5138g00003 605 SUPERFAMILY Protein kinase-like (PK-like) 10 308 IPR011009 -
Vium5138g00003 605 Gene3D Transferase(Phosphotransferase) domain 1 99 327 - -
Vium5138g00003 605 SMART serkin_6 13 304 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5138g00003 605 Pfam Protein kinase domain 14 304 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5138g00003 605 ProSitePatterns Protein kinases ATP-binding region signature. 19 43 IPR017441 GO:0005524
Vium5138g00003 605 CDD STKc_TDY_MAPK 12 349 - -
Vium5138g00003 605 ProSitePatterns MAP kinase signature. 48 151 IPR003527 GO:0004707|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5138g00003 Vium-Chr5138 20853 26765 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5138g00003 1 420 MAP Kinase Gene Family AT2G42880 87.097 0.0 772
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Vium5138g00003 Pkinase 6.5e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5138g00003 - - gmx:100811788 1069.3