Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5135g00011 ATGGCAGATTCTTCCAGGGAAGACAACGTTTACATGGCGAAATTGGCCGAGCAGGCCGAGCGGTATGAGGAGATGGTTGAGTTCATGGAGAAGGTAGCGAAGACTGTGGAGGTTGAGGAGTTGACTGTGGAGGAGAGGAATCTTCTCTCTGTGGCGTACAAGAATGTGATTGGGGCGAGGAGGGCTTCGTGGAGGATTATATCCTCCATTGAGCAGAAGGAGGAGAGCAGAGGCAATGAGGACCACGTGGCTATTATAAAGGAATACAAGGGAAAGATTGAGACCGAACTCAGCAAGATCTGTGATGGGATTTTGAACCTCCTCGAGTCCAACCTCATCCCTTCTGCTCAATCTCCCGAAAGTAAAGTCTTTTACCTTAAAATGAAGGGTGATTACCACAGGTACCTTGCCGAGTTTAAGACTGGGGCAGAGAGGAAAGATGCTGCAGAGAGTACTTTGCTTGCTTACAAATCCGCTCAGGATATTGCTCTTGCTGACCTGGCCCCCACCCACCCTATTAGGCTTGGACTTGCTCTCAACTTTTCTGTGTTCTATTATGAAATCCTTAACTCACCAGATCGTGCTTGTAATCTTGCCAAGCAGGCATTTGATGAGGCAATTTCCGAGCTTGACACATTGGGTGAAGAGTCGTACAAAGATAGTACGTTGATCATGCAACTTCTCCGTGACAACCTGACTTTGTGGACATCAGACATCACGGACGATGCTGGGGATGAGATCAAGGAGACAACCAAGCAACCAGGTGAATAG 771 0.4799 MADSSREDNVYMAKLAEQAERYEEMVEFMEKVAKTVEVEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHVAIIKEYKGKIETELSKICDGILNLLESNLIPSAQSPESKVFYLKMKGDYHRYLAEFKTGAERKDAAESTLLAYKSAQDIALADLAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAISELDTLGEESYKDSTLIMQLLRDNLTLWTSDITDDAGDEIKETTKQPGE 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5135g00011 256 Coils Coil 12 39 - -
Vium5135g00011 256 SMART 1433_4 6 249 IPR023410 -
Vium5135g00011 256 FunFam 14-3-3 protein epsilon 1 249 - -
Vium5135g00011 256 PRINTS 14-3-3 protein zeta signature 209 238 IPR000308 -
Vium5135g00011 256 PRINTS 14-3-3 protein zeta signature 40 69 IPR000308 -
Vium5135g00011 256 PRINTS 14-3-3 protein zeta signature 89 113 IPR000308 -
Vium5135g00011 256 PRINTS 14-3-3 protein zeta signature 182 208 IPR000308 -
Vium5135g00011 256 PRINTS 14-3-3 protein zeta signature 120 142 IPR000308 -
Vium5135g00011 256 PRINTS 14-3-3 protein zeta signature 155 181 IPR000308 -
Vium5135g00011 256 PIRSF 14-3-3 1 248 IPR000308 -
Vium5135g00011 256 ProSitePatterns 14-3-3 proteins signature 1. 46 56 IPR023409 -
Vium5135g00011 256 ProSitePatterns 14-3-3 proteins signature 2. 218 237 IPR023409 -
Vium5135g00011 256 Pfam 14-3-3 protein 12 236 IPR023410 -
Vium5135g00011 256 SUPERFAMILY 14-3-3 protein 5 238 IPR036815 -
Vium5135g00011 256 Gene3D - 1 249 IPR036815 -
Vium5135g00011 256 PANTHER 14-3-3 PROTEIN 6 240 IPR000308 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5135g00011 Vium-Chr5135 81280 84046 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5135g00011 4 256 14-3-3 family AT3G02520 88.976 1.27e-167 462
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5135g00011 K06630 - gmx:547657 466.848