Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5122g00002 ATGGGGTGTGTCGGTTTCAGCTACGATGTGTTCATTAGTTTCAGAGGCGAAGATACTAGGGACAATTTTGTAGGGCATCTCCGTAAAGAGTTGGGTAGGAGGGGAATACTCACTTTCCATGATGACAGGGATATGGGGATAGGGGAAAGTCTTTCACCTGCTCTCAACAACGCCATGGAAGAATCTAGGATTTTCATCGTTGTGTTTTCTGAGAACTATGCGTCTTCCACATGGTGTCTCGATGAACTTGTCAGGATCATCCAGCTCTCCAAGAAGAGGGAGAAGAAGCAAGTTGTTTTCCCAGTGTTCTACCATGTACATTCATCAGATATACTGCAAGACAGAAATAGCTTCGGAAAACACATGAGGGCACATGAAATTACGTTTGGAAAACAGTCCCAGAGAATGCAGGCTTGGAGGTCTGCTTTGTCTGAAGCAGTTCACTTGCCAAGGAAGCATATTACCACCGAGTGTGAAAACAATTTTATTGAAGAAATTGTTAGGGAGGTGTATAAGAATATAGCTCCTAAACCTTTATATACTGGTCAAAACCCTCTCGGACTTGAGCCCCATATAGAAGAGGTTAAGTCACTTTTGGACATTAAGCCTGATGACAACACTGTAAGAATGTTGGGCATATATGGACTTGGTGGAATTGGAAAAACGGAACTTGCCAAAGCTTTGTATGACAAAATTGTGCAACACTTTGATGCTGCAAGTTTTCTTGCCGGCGTTAGAGAAAAATCAAACACAATCAATGGCATGGAAGATCTACAGAAGACACTTTTATCTGAGATGTTAGAGGAGTCGGAAACTACGTTGGGAAGTACCGATAAAGGAATTTATGAAATAAAACGAAAACTTCGACGAAAGAAAGTTCTTTTGGTTCTTGATGACGTTGATGATAAAGAAGAGTTAGAAAAGTTGGCAGGAGGGTGTGATTGGTTTGGTCCAGGTAGTAGGATCCTTATAACGACAAGGGAAAAAGATGTCCTGATTGCTCACCATGTTGGAAATATTTATGAAATGAAGGAACTTGATGAACAACATTCTTTGGAGCTCTTTTGTTGGAATGCCTTCGGACAAGGCTGTCCTAAAACAGGTTTTCGAGATGTTTCCCTGCGTGCTGTAGATTACGCCAAAGGTCTTCCACTTGCTTTAAAAGTGATAGGCTCTGACTTAGCTACTCTTCATGAAGAAGGTTTAGATGCCTGGAAAGATGCATTAGAAGAATATGAGAAGACTCCTCCGAATAAAAAGATTCAAGATGTGCTTAAAATAAGCTACGAAAGATTGGATGATGATGCGAAACAAGTTTTCTTGGACATAGCTTGCTTCTTTAAAGGTGAGAGAATGGAATATGTGAGCAAGATACTTGACGAATTTGGTTCAGCATTCAAAATCAAAGTACTTGTTAATAAATCTCTCATAACTGTCGATAAAGGCTGCCTCAAGATGCATGATCTAATACAAGATATGGGTAGACAGATTATTAGGCAGGAAGCACCGAATCCTGGTGAACGTAGCAGAATATGGGATTATGAAGATGTTATTGAAATACTAAACGAAGATTATGGAAGTGATAAGATTCAAGGGATTATGCTTGATCCTCCTCAGCAAGAAATGGTAAAATGGAGTGGTACTGAGTTTGAGAAAATGAAATGCCTCAGAATTCTCATTGTTCGAAACACATCATTTTCATCTGAACCCGAACATTTACCAAATCATTTAAGACTGCTTGACTGGGACAACTATCCTTCAAAGTCTTTCCCACCAAAATTTCATCCAAAGAAAATTGTTCTCTTCAATTTGCCTAGAAGTTGTCTAACATTGGAAGAGCCATTCAAGAAATTTCCATGCTTGACTAATATGGACTTTTCATATAACCAACATATCATTGAAATACCTGATGTGTCCGAACTTCAGAATCTAAGAGAATTGAGACTTGATCATTGTAGAAACCTAATTGCAGTCCATCAATCTGTTGGATTTTTGAAAAGGCTTTCTCATTTAAGTGTTTCAGAATGCACAAAACTTCAAAATTTCCTGTCCAGAATGTTTCTACCATCTCTACAAATCTTTAATCTTAACTTTTGTGAAAGCCTTGGTTACTTCCCAGAGATAATGAAAGAAATGACAAAGCCATTGAAGATTCATATGATAAATACTGCTGTTCAAGAGCTTCCAGAATCCATTAGTAAACTTACTGGGCTTGTTTCCATAGACATATCGAATAACAGGGAACTTAAATATCTACCGAGGAGCTTATTCATGTTGCCAAATGTTGATTCTTTCATAATCAAAGCATGTTCCAAACTTGGAGAATCCATCAGAAGTTTGGTGCAACACCCTTTAAAAGCCAATGTTCATCAAAAATTACGATTACTGAATTTCGAAAATGGGAACTTGTCAGATGCAGATCTTCTTGCAATTATTTGTTACTTTCCAAAATTAGAAGAATTGATTGTTTCAGAGAACAATTTTGTATCTATTCCTTCATGCATAAAGGAATGTGGTGACTTGACAAGTCTCGATTTGAATGGATGTAAGAAGCTTAAAAAAATTCCTGAACTCACTAGCTTGAGAATTCTTGATGTTCATGATTGTCTATACCTCGAAGAAATTTCAGAGTTGCCGTCTACTGTTCAGAAAGTAGATGCAAGATTTTGTTTCAAATTAACAAAAGAGACATCAGACATGTTATGGTATCAGGTGAAGAAAGGGGTAGGAGGAATAGAAATGGTGATGCCATTTATAACAGAGATTCCAGAATGGTTTAACTTTGTGGGGGTGGGAAGGATTCCTAGTTTCTGGGTTCGTGGCAAGTTCCCTAAGATTGTTGTAGCCATGATCTTCCACTTCCAAAATGAGAGTCAAAGGGACAGATACGATGGTCGTGGCCTTGTTGATCTGCGTTTACTAATCAACGGGCGATATGCTCCTCGAAAAGGGTATCGGAACTTTAGAATTGAGGCAGAGCACATCTTGTTGTGTGATGTAGGAGTTTTGTGCAGCGAGAAGGAGTGGGTTGGCAATGCAGTTATGGAGCATGAGTGGAATCTGGTGGAGGTTTCGTATGATGCGACGTCGTCGTTGATGATAAGTGGTTGGGGAGCGTTTGTGTTTGAAGAAGGAACGAATATGGAAGATCTCCTGTTCGCCAGTCCCAATAACTTGATTGTGAACGGAGATTCAACCTCTGTCCATAAGGGAAGTTTGGAGGACGACGAAAACTACGTTGCTCTTCCGGAAGGAATAGCATGGGAATCGTTGTTTAAAGGAATAAAGGATGGAATTGTTGAGGCATGGAAAAAGTTTCCTTCTATGGATGCTGCTGAAATCTCTGTGGCTGCATTGAAGAAGAATCGTAAGATTGAATGGACAGTTGAAGGGATGGAGGGAATACCCTCAGCTGAAAATAGGACGTACATGAGTGGACTTTACGGTGTACTCTTGGAAGCAAAACTCAGATTTCCTGATTTGGACGTTGGGGCAGCACTAACTAATGTGGCAAATAGGAAAGGGATTAAAGGAACTTTTGGATCACCCGCAAAACCAGAGATGACAATTCCAAAATTGGATTGGAGTACGGTGACACTTCCTCCTTCTCATGACCCTCTGATGCAAATATTCATGATGATGATGAAGCAGCAAAGTACTTCGGAATCCGAACTCAAAACTAAAACCTTCTGGAAGTTGAAGGAGAGCCACCAAATTCTCCGCAACAGATTGTCACATAAGACTGCTGCTCAGAACTCAGGCAGCTCTTCGAAAAATCAATATGACGAACTGATTCAGAAATTCAACATGCAATATGATGCGTTTGTTGGGAAGAGAGTAGACAACCTTTATGGTGTGGCAAAGCATGAGAAGGATAGTGGTGTTTTGAAAGAAAGAGCTAAAGAAATAGAGAGGGAATTGGATGCTGTGGTTGGGTGGCTCCAAAAATCAGAGGAGTTTGGAGATGTAATGACTGCGATGTTCTTGAATGGACTCAGGGATGGAATCCTTGAAGCACGGGCCATCTTACTTGCTCTCCGTACGGACACACAAACTCATGAACGTGTCACCGATGAGGCTCCTAACAGTGAAAACATTGCCTAG 4104 0.4008 MGCVGFSYDVFISFRGEDTRDNFVGHLRKELGRRGILTFHDDRDMGIGESLSPALNNAMEESRIFIVVFSENYASSTWCLDELVRIIQLSKKREKKQVVFPVFYHVHSSDILQDRNSFGKHMRAHEITFGKQSQRMQAWRSALSEAVHLPRKHITTECENNFIEEIVREVYKNIAPKPLYTGQNPLGLEPHIEEVKSLLDIKPDDNTVRMLGIYGLGGIGKTELAKALYDKIVQHFDAASFLAGVREKSNTINGMEDLQKTLLSEMLEESETTLGSTDKGIYEIKRKLRRKKVLLVLDDVDDKEELEKLAGGCDWFGPGSRILITTREKDVLIAHHVGNIYEMKELDEQHSLELFCWNAFGQGCPKTGFRDVSLRAVDYAKGLPLALKVIGSDLATLHEEGLDAWKDALEEYEKTPPNKKIQDVLKISYERLDDDAKQVFLDIACFFKGERMEYVSKILDEFGSAFKIKVLVNKSLITVDKGCLKMHDLIQDMGRQIIRQEAPNPGERSRIWDYEDVIEILNEDYGSDKIQGIMLDPPQQEMVKWSGTEFEKMKCLRILIVRNTSFSSEPEHLPNHLRLLDWDNYPSKSFPPKFHPKKIVLFNLPRSCLTLEEPFKKFPCLTNMDFSYNQHIIEIPDVSELQNLRELRLDHCRNLIAVHQSVGFLKRLSHLSVSECTKLQNFLSRMFLPSLQIFNLNFCESLGYFPEIMKEMTKPLKIHMINTAVQELPESISKLTGLVSIDISNNRELKYLPRSLFMLPNVDSFIIKACSKLGESIRSLVQHPLKANVHQKLRLLNFENGNLSDADLLAIICYFPKLEELIVSENNFVSIPSCIKECGDLTSLDLNGCKKLKKIPELTSLRILDVHDCLYLEEISELPSTVQKVDARFCFKLTKETSDMLWYQVKKGVGGIEMVMPFITEIPEWFNFVGVGRIPSFWVRGKFPKIVVAMIFHFQNESQRDRYDGRGLVDLRLLINGRYAPRKGYRNFRIEAEHILLCDVGVLCSEKEWVGNAVMEHEWNLVEVSYDATSSLMISGWGAFVFEEGTNMEDLLFASPNNLIVNGDSTSVHKGSLEDDENYVALPEGIAWESLFKGIKDGIVEAWKKFPSMDAAEISVAALKKNRKIEWTVEGMEGIPSAENRTYMSGLYGVLLEAKLRFPDLDVGAALTNVANRKGIKGTFGSPAKPEMTIPKLDWSTVTLPPSHDPLMQIFMMMMKQQSTSESELKTKTFWKLKESHQILRNRLSHKTAAQNSGSSSKNQYDELIQKFNMQYDAFVGKRVDNLYGVAKHEKDSGVLKERAKEIERELDAVVGWLQKSEEFGDVMTAMFLNGLRDGILEARAILLALRTDTQTHERVTDEAPNSENIA 1367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5122g00002 1367 Pfam NB-ARC domain 189 430 IPR002182 GO:0043531
Vium5122g00002 1367 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 8 753 IPR044974 GO:0006952
Vium5122g00002 1367 FunFam Disease resistance protein (TIR-NBS-LRR class) 5 176 - -
Vium5122g00002 1367 ProSiteProfiles TIR domain profile. 6 174 IPR000157 GO:0007165
Vium5122g00002 1367 SUPERFAMILY Toll/Interleukin receptor TIR domain 5 146 IPR035897 -
Vium5122g00002 1367 Pfam TIR domain 8 174 IPR000157 GO:0007165
Vium5122g00002 1367 Gene3D - 6 174 IPR035897 -
Vium5122g00002 1367 SUPERFAMILY L domain-like 485 877 - -
Vium5122g00002 1367 Gene3D - 175 338 IPR027417 -
Vium5122g00002 1367 PRINTS Disease resistance protein signature 639 655 - -
Vium5122g00002 1367 PRINTS Disease resistance protein signature 210 225 - -
Vium5122g00002 1367 PRINTS Disease resistance protein signature 287 301 - -
Vium5122g00002 1367 PRINTS Disease resistance protein signature 380 394 - -
Vium5122g00002 1367 Gene3D - 345 433 IPR042197 -
Vium5122g00002 1367 Coils Coil 1286 1306 - -
Vium5122g00002 1367 SMART till_3 7 149 IPR000157 GO:0007165
Vium5122g00002 1367 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 178 443 IPR027417 -
Vium5122g00002 1367 Gene3D Ribonuclease Inhibitor 545 719 IPR032675 -
Vium5122g00002 1367 Gene3D Ribonuclease Inhibitor 720 902 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5122g00002 Vium-Chr5122 9463 14833 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5122g00002 8 822 WRKY Transcription Factor Family AT4G12020 31.108 6.54e-101 354
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5122g00002 - - var:108338187 2013.42