Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5109g00002 ATGAGTACGGCAAAGAACGCGGCAAACGCGGTTGGAGGCAAAACCGCAAGAGCATGCGACAGCTGCATAACCAAGCGGGCACGTTGGTACTGTGCTGCCGATGATGCTTTTCTCTGCCAAGCTTGTGACTCTTCGGTTCACTCCGCCAATCCTTTGGCTCGCCGACACGAAAGAGTCCGCTTGAAAACGGCGTCGTACAGGTCCACCGACGAACAACAACAACAACAACAACCTCCCACGTGGCCCACTAAGAAAGCTCGAACGCCCAGACACGGGAAACACTCTCGTAGCAACAACCCCTTCCATCTGGTCCCGGAAGTGGGTTCGGAAGAGGTGAATTCCCATGACGAGAACGAGGAGCAGCTTCTTTACAGGGTCCCCATATTCGAACCTTTTGTTGCCGAGCTATGTGGGAATAACAGCTCTTCTCCTTCTTCGGTGACTTCAACCGATCAAGGAGTGGCAGCTGCTGTGGGCCGAGGCTCGAAAACAAAGGTTGTGAGAGCTAATGTTTTATATCGACAGTAA 528 0.5284 MSTAKNAANAVGGKTARACDSCITKRARWYCAADDAFLCQACDSSVHSANPLARRHERVRLKTASYRSTDEQQQQQQPPTWPTKKARTPRHGKHSRSNNPFHLVPEVGSEEVNSHDENEEQLLYRVPIFEPFVAELCGNNSSSPSSVTSTDQGVAAAVGRGSKTKVVRANVLYRQ 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5109g00002 175 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 8 151 - -
Vium5109g00002 175 ProSiteProfiles Zinc finger B-box type profile. 14 61 IPR000315 GO:0008270
Vium5109g00002 175 MobiDBLite consensus disorder prediction 66 83 - -
Vium5109g00002 175 SMART bboxneu5 14 61 IPR000315 GO:0008270
Vium5109g00002 175 MobiDBLite consensus disorder prediction 65 104 - -
Vium5109g00002 175 CDD Bbox1_BBX-like 18 61 - -
Vium5109g00002 175 Pfam B-box zinc finger 16 59 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5109g00002 Vium-Chr5109 1027 1628 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5109g00002 5 152 C2C2-CO-like Transcription Factor Family AT1G68520 54.321 2.12e-47 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vium5109g00002 zf-B_box 2.2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5109g00002 - - vum:124839971 342.813