Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5108g00001 ATGGATGCTACCACAAGCTCTGAACTTCCCCCTGGCTTTAGGTTTCACCCAACGGACGAGGAACTAATCGTGTATTACCTCTGCAACCAAGCCACATCAAAGCCCTGCCCTGCTTCTATCATCCCAGAAGTCGATCTCTACAAGTTTGATCCATGGGAATTGCCAGATAAAACAGAGTTTGGAGAAAATGAATGGTATTTCTTTAGTCCACGAGACAGAAAGTACCCAAACGGTGTGAGGCCGAACAGAGCAACAGTGTCTGGGTATTGGAAGGCCACTGGCACAGACAAGGCAATCTATAGTGGATCTAAGCTTGTGGGGGTGAAGAAATCCTTAGTATTTTATAAGGGTAGGCCACCAAAGGGTGACAAGACTGATTGGATTATGCATGAATACCGATTGGCGGAATCAAAACAATCGGCTAACAGGAAAATTGGGTCCATGAGGCTGGATGACTGGGTCCTGTGCAGGATTTATAAGAAGAAGAACATCGGAAAAACAGAGCACAAGGAGACGCACCCAAAAGTTCAAATGACTGATCTTATAGCTGAAAACAATGATGAGCAGAAAATGATGATGAACCTTCCCAGGACTTGGTCCCTCACTTACCTTTTGGATATGAATTACTTGGGTCCAATTTTATCTGATGGCCCCTATTGCTCAACCTTTGATTTTCAAATGAGCAATGCCAATATTGGAATTGACCCCTTAGTAAAATCTCAACCGGTTGAAATGGCGAACAATTATGTAGCAGACTCAGGGAAATACTGA 771 0.4384 MDATTSSELPPGFRFHPTDEELIVYYLCNQATSKPCPASIIPEVDLYKFDPWELPDKTEFGENEWYFFSPRDRKYPNGVRPNRATVSGYWKATGTDKAIYSGSKLVGVKKSLVFYKGRPPKGDKTDWIMHEYRLAESKQSANRKIGSMRLDDWVLCRIYKKKNIGKTEHKETHPKVQMTDLIAENNDEQKMMMNLPRTWSLTYLLDMNYLGPILSDGPYCSTFDFQMSNANIGIDPLVKSQPVEMANNYVADSGKY 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5108g00001 256 ProSiteProfiles NAC domain profile. 9 161 IPR003441 GO:0003677|GO:0006355
Vium5108g00001 256 Gene3D NAC domain 18 165 IPR036093 GO:0003677|GO:0006355
Vium5108g00001 256 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 8 179 - -
Vium5108g00001 256 FunFam NAC transcription factor 18 165 - -
Vium5108g00001 256 SUPERFAMILY NAC domain 5 161 IPR036093 GO:0003677|GO:0006355
Vium5108g00001 256 Pfam No apical meristem (NAM) protein 10 134 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5108g00001 Vium-Chr5108 10646 12210 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5108g00001 1 213 NAC Transcription Factor Family AT1G69490 68.000 1.51e-110 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vium5108g00001 NAM 6.2e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5108g00001 - - gmx:100785110 457.988