Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5107g00018 ATGGTGAAGTTGGTTGTGAAAGCTGGGAGCAGACCTCCATGGGTGGGTCTTGCATCTGCAGTGTGGATTCAAATAGCAGTTGGAAATCCATTCAACTTTCCTCTCTATTCTTCTGCCCTCAAATCTGTTTTGTCTCTCAACCAGCAACAGATCACTATTCTCGGAGTGGCCAATGATGTTGAGGAGAGCATGGCTCTGCTTCCAGGCATTGCCTCCAACAACTTCCCTCCTTGGGCTTTCCTTCTCCTTGGTTCTCTCCTTTGTTTCTTTGGTTATGGCCTTATCTTCCTTGCTGTTACACAAACTGTTTCCCAACTCCCTTATATCCTGATATGCCTTGCCCTATGTGTTGCCGCTAACAGCAGTGCATGGTTTGGAACAGCTGTGTTTGTCACCAACATGAGAAACTTTCCTCTCAGTAGAGGCACCATCTCTGGCATTCTTAATGGTTATGGAGGAATTAGTGCTGAAGTATACACCTTAATATATAGCTTGGTGCTGAAAGGGTCTGCTTCTAAATTGCTTTTGTTCCTTGCTGTCGGACTTCCTGCTGTATGTTTATTAATGATGTTCTTCATTCGGCCTTGCACTCCTTCTGGTGAAGACTCTTCAGTGCATGTGCATTTTATTTTTGTCCAAGCTGCAAGTGTTTTACTTGCTTCCTATCTTGTTGTCACCACAATTGTGAGTGACGTGGTCTCTATAAATGATGCTCTAACCTACTTCTTGGTTGCCATAATGGTTTTACTTCTGGTGGCTCCCCTTGCAATTCCTATAAAAATGACACTATTTCCTTCTAATTCCAAGTGCAACGTTTCACTGGTTGGTTCTTCAGATAATTTGGCATCGGAGAGTGACATTTCAACGCAGACAAGTCCATTGCTAACACCATCTTCATCAGCTGCTATTCTTGAAAGTTTTCATGAAAGGGGTGATGTCTCGGATGTTGAGATGCTCATTGCAGAAGGACAGGGAGCAGTGATACAGAAAAGGAGACCTAAGAGGGGAGATGATTTCAAGTTCCGTGAAGCTTTCATCAAAGCAGACTTTTGGCTTTGCTGGTTTGCTTATTTTCTTGGGGCTGGCTCAGGAGTAACGGTTCTCAATAATTTGGCTCAAATTGGAGTTGCTTTAGGTGTAGAAGATACAACCATATTATTGTCAGTCTTCAGCTTCTGCATATTTATTGGCCGCCTTGGCACTGGTGTTGTTTCTGAATACTTTGTCAGGTTGATAGCACTACCTCGAACATTTTGGATGACATGTGCACAAATAATCATGATCGTAGCATTTTTATTTTATGCTTCTGCTCTGAACGGCACTCTTTATGCTGCAACTGCTCTACTTGGTATCTGCTACGGGGTTCAATGTTCTATAATGGCTCCAACTGTCTCAGAGATTTTTGGTCTGAAACACTTCGGTGTTATAAGTAGCTTCATGATGCTAGGCAATCCAATTGGTGCCCTTATTTTCTCTGTTTTTCTTGCGGGCAACGTGTACGATACAGAAGCTGCAAAGCAAGGAAACTCCACCTGCTATGGTGCAGATTGCTTCAGGTTGACTTTTCTGGTTTTGGCTGGTGTCTGTGGACTTGGTACCATCTTGAGTATTATTTTGACAATTAGAATGCGACCAGTGTATAAAATGTTGTATGCTGGAGGTTCATTTCGTCTATCTCAGAATTCAGGTCACTGA 1695 0.4289 MVKLVVKAGSRPPWVGLASAVWIQIAVGNPFNFPLYSSALKSVLSLNQQQITILGVANDVEESMALLPGIASNNFPPWAFLLLGSLLCFFGYGLIFLAVTQTVSQLPYILICLALCVAANSSAWFGTAVFVTNMRNFPLSRGTISGILNGYGGISAEVYTLIYSLVLKGSASKLLLFLAVGLPAVCLLMMFFIRPCTPSGEDSSVHVHFIFVQAASVLLASYLVVTTIVSDVVSINDALTYFLVAIMVLLLVAPLAIPIKMTLFPSNSKCNVSLVGSSDNLASESDISTQTSPLLTPSSSAAILESFHERGDVSDVEMLIAEGQGAVIQKRRPKRGDDFKFREAFIKADFWLCWFAYFLGAGSGVTVLNNLAQIGVALGVEDTTILLSVFSFCIFIGRLGTGVVSEYFVRLIALPRTFWMTCAQIIMIVAFLFYASALNGTLYAATALLGICYGVQCSIMAPTVSEIFGLKHFGVISSFMMLGNPIGALIFSVFLAGNVYDTEAAKQGNSTCYGADCFRLTFLVLAGVCGLGTILSIILTIRMRPVYKMLYAGGSFRLSQNSGH 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5107g00018 564 Pfam Nodulin-like 13 259 IPR010658 -
Vium5107g00018 564 Gene3D MFS general substrate transporter like domains 328 549 IPR036259 -
Vium5107g00018 564 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 14 548 - -
Vium5107g00018 564 SUPERFAMILY MFS general substrate transporter 12 197 IPR036259 -
Vium5107g00018 564 SUPERFAMILY MFS general substrate transporter 231 545 IPR036259 -
Vium5107g00018 564 CDD MFS_Mch1p_like 12 533 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5107g00018 Vium-Chr5107 107975 110902 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5107g00018 1 564 Nodulin-like Gene Family AT1G80530 60.247 0.0 686
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5107g00018 - - psat:127087605 831.247