Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5107g00014 ATGGAAAGCTTAAAAACACCTTTGGAAGGTGTTAAAAAAGACCTTCAAGGAAGAGCGGAGTTCTATAAAGATGATTGGACAAGTGGTCTTTATGCTGGAACTGCAATATTGGCCCCAACTACCTATATTTTCTTTGCTTCTGCTCTTCCAGTCATTGCCTTTGGCGAGCAGCTAAGTAGAGACACAGATGGAAGCTTGAGCACTGTAGAAACGCTGGCTTCTACAGCTATTTGTGGAATCATACACTCGATTTTGGGTGGCCAGACTCTCTTAATCGTAGGAGTTGCTGAACCCACTATCATTATGTACACCTATTTGTACAACTTCGCCAAAGATAAGGATTCCTTGGGACGAGATCTCTTTTTAGCTTGGGCAGGATGGGTCTGTGTATGGACTGCTCTCTTGTTGTTTCTTCTAGCAATATTCAATGCTGGAAATATCATCAATAGATTTACAAGGATCGCGGGTGAGCTTTTTGGCATGTTGATCACAGTCTTGTTCATTCAAGAGGCTATAAAGGGAATTGTAAGTGAGTTTAATGTTCCTAAAGAGGGAGACCCAACATTGGAAAAGTACCATTTTAATTGGCTGTATGCAAATGGATTGATGGGCATTATATTCACCTTTGGCCTTCTCTATACATCTTTAAAGAGCAGAAGAGCAAGGTCATGGTTATATGGCACAGGATGGTTTAGAAGTTTTGTTGCAGACTATGGGGTACCTTTCATGGTGGTGGTGTGGACAGCACTATCATTCACAGTACCGAGTAAAGTGCCTTCTGGAATTCCCAGAAGGCTCACCTCTCCTCTTGTTTGGGAGTCTACAACTTTATATCATTGGACAGTAATTAAAGATATGGGGAAGGTTTCCCCGTCATATATTTTTGCTGCTTTTATTCCCGCAATAATGATAGCGGGACTTTACTTCTTTGACCATAGTGTTGCTTCCCAGATGGGACAACAAAAGGAATTCAATCTCAATAAACCTTCTGCATACCACTATGACATATTGTTGCTAGGACTAACGACCTTGCTTTGTGGATTGATTGGCTTACCTCCTTCAAATGGAGTTCTTCCTCAATCTCCTATGCACACTAAGAGTCTGGCTGCTCTCAAGAAACAGATGATCCAAAAAAAGATGGTTAAAAGTGCCAAGGAAAGCATAGATCTTAAAGCTAGCAATTCTGAAATTTATGGAAAGATGCAAGCAGTATTTATAGAAATGGATAAGTGTTCAGATAAACATTTAGTGGACAAAGAACTAGAGGATTTGAAAGAGGTTGTCTTAAACGGGGAAGATAAAGGACATGACAAAAAGAGTAAGTTTGATCCTGAAAAACACATTGAAGCATATTTGCCCGTAAGAGTAAAGGAGCAGAGAGTGAGCAATCTCTTACAATCAATCTTTGTTGGAGCANATATATATATATGA 1431 0.399 MESLKTPLEGVKKDLQGRAEFYKDDWTSGLYAGTAILAPTTYIFFASALPVIAFGEQLSRDTDGSLSTVETLASTAICGIIHSILGGQTLLIVGVAEPTIIMYTYLYNFAKDKDSLGRDLFLAWAGWVCVWTALLLFLLAIFNAGNIINRFTRIAGELFGMLITVLFIQEAIKGIVSEFNVPKEGDPTLEKYHFNWLYANGLMGIIFTFGLLYTSLKSRRARSWLYGTGWFRSFVADYGVPFMVVVWTALSFTVPSKVPSGIPRRLTSPLVWESTTLYHWTVIKDMGKVSPSYIFAAFIPAIMIAGLYFFDHSVASQMGQQKEFNLNKPSAYHYDILLLGLTTLLCGLIGLPPSNGVLPQSPMHTKSLAALKKQMIQKKMVKSAKESIDLKASNSEIYGKMQAVFIEMDKCSDKHLVDKELEDLKEVVLNGEDKGHDKKSKFDPEKHIEAYLPVRVKEQRVSNLLQSIFVGAXIYI 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5107g00014 476 PANTHER ANION EXCHANGE PROTEIN 5 474 IPR003020 GO:0005452|GO:0006820|GO:0016020
Vium5107g00014 476 Gene3D Helical hairpin bin 18 60 - -
Vium5107g00014 476 Pfam HCO3- transporter family 200 375 IPR011531 GO:0006820|GO:0016020
Vium5107g00014 476 Pfam HCO3- transporter family 8 180 IPR011531 GO:0006820|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5107g00014 Vium-Chr5107 87228 89860 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5107g00014 1 475 Antiporters AT1G74810 69.375 0.0 701
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5107g00014 K24194 - gmx:100811184 837.41