Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5107g00013 ATGTCTGACAGCAACCAATGTTCTTCTTCATCCATTAGCTCCAGTTTAGAATTGCAGAACAAGTCCTTAAAATCTGTAGACAGTACTTATTTTGACGAATATGATTTTGAACTGGAACCTGAAATCGAAGACGAGGATGAAGATTTCGAAACGAGCATCGATAATTACTCCTTTATTATTGAAGGGACCAACAAAGGCTCTGGGATACCTGGGGCTGTTTTCAATTTAACAACCACGGTTATTGGGGCAGGGATCATGGCCCTCCCTGCCACTATGAAAGTTCTAGGATTGGTTTTGGGGATTATTTTGATAATTCTTATGGGAATTTTGTCTGAAATTAGCGTGGAATTGTTGGTGAGGTTTTCTGTTTTGTGTAAGGCATCCTCCTATGGGGAGGTTGTTCAGCATGCAATGGGAAAGCGTGTGAGGATTTTGTCTGAAATCTGCATTATTTTGAACAATGCCGGTGTTTTGGTGGTTTACTTGATAATCATGGGGGATGTTATGTCTGGTTCCTCTCACCATATGGGGGTTTTTGATCAGTTAATGGGGAATGGGGCGTGGGATCAAAGGAAGATTGTGGTTTTAGTTGTCATGGTGGTTTTCCTTGCTCCCCTTTGTTCACTTGACAAGATCGATTCATTGAGCTTGACCTCGGCTGCCTCCGTGGCTCTTGCTGTTTTGTTCGTCGTTGTTGCTTTTACGGTTGCTTTCATCAAGCTCGTGGAAGGACGGATTGATTCTCCCAGATTGGCTCCTGATCTTAGCTCCAAAACTGCAATTTTGGATTTTCTTGTTGCGATACCCATCATGACCAATGCATATGTTTGCCAGTTTAATGTGCCGCCAATATATAATGAGCTCGAACAACGGTCTCCTCGAAAGATGAACACGGTTGGGAGGTACACCACTGTTTTGTGCATCGTAGTTTATGCTTGCACTTCCATATCGGGTTACCTGCTCTTTGGGAAAGACACAGAGGCTGATGTACTGACTAATTTTGATAAGGATCTTGGAATTCGGTATAGCTCGGTCTTGAACTATATTGTCCGGATTGGCTACATTCTTCATTTGATACTTGTTTTCCCTGTTATTCATTTTTCATTGCGCCAAACAGTGGACGCATTATTGTTTGAGGGATCACCTCCTCTTTCAGAAAGTAAGAAGAGATCTTTGGGGTTGACTGCGGTTCTGTTGGTCCTCATATATATTGGGTCTACTATGATTCCAAACATCTGGACAGCTTTTAAGTTCACTGGGGCAACCACGGCTGTTTCATTGGGTTTTATATTTCCTTCTCTTGTTTCTTTGAGACTAAAACATCTGGGAGATCTAAGCTACGGAGAATGGGTTTTGTCATGGTTGATGTTGGTATTAGCTGTGACTGTTAGCATAGTAGGAGTTGTTAGCAATGTTTATAGCCTTCAGAGTAAGTCTTAG 1440 0.4208 MSDSNQCSSSSISSSLELQNKSLKSVDSTYFDEYDFELEPEIEDEDEDFETSIDNYSFIIEGTNKGSGIPGAVFNLTTTVIGAGIMALPATMKVLGLVLGIILIILMGILSEISVELLVRFSVLCKASSYGEVVQHAMGKRVRILSEICIILNNAGVLVVYLIIMGDVMSGSSHHMGVFDQLMGNGAWDQRKIVVLVVMVVFLAPLCSLDKIDSLSLTSAASVALAVLFVVVAFTVAFIKLVEGRIDSPRLAPDLSSKTAILDFLVAIPIMTNAYVCQFNVPPIYNELEQRSPRKMNTVGRYTTVLCIVVYACTSISGYLLFGKDTEADVLTNFDKDLGIRYSSVLNYIVRIGYILHLILVFPVIHFSLRQTVDALLFEGSPPLSESKKRSLGLTAVLLVLIYIGSTMIPNIWTAFKFTGATTAVSLGFIFPSLVSLRLKHLGDLSYGEWVLSWLMLVLAVTVSIVGVVSNVYSLQSKS 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5107g00013 479 PANTHER AMINO ACID TRANSPORTER 63 463 - -
Vium5107g00013 479 Pfam Transmembrane amino acid transporter protein 67 468 IPR013057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5107g00013 Vium-Chr5107 75422 77455 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5107g00013 19 479 Amino Acid or Auxin Permease AAAP Family AT1G80510 71.490 0.0 637
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5107g00013 - - var:108333183 785.023