Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5107g00012 ATGTCTAACAGAAATGAATATTCTTCTTTACCCGTTAGCTCCTATTTAGAATTGCAGCGTCAGAACGAGTCCTCAAAATCTGTTGGCATTCCTTCTTATGACGAATCCGAAGTGTATTTGGGATCCAAAATCGAAGACGAGGATGAAGATTTCGAAACGGACATCGATAATTACCCCCTTGTTATTGTGGGGTCCAATAAAGGCTCTGGGATACCTGGGGCTGTTTTCAATTTAACAACCACGGTTATTGGGGCAGGGATCATGGCTCTCCCTGCCACTATGAAAGTTCTAGGATTGGTTTTGGGGATTATTTTGATAATTCTTATGGGAATTTTGTCTGAAATTAGCGTGGAATTGTTGGTGAGGTTTTCTGTTTTGTGTAAGGCATCCTCCTATGGGGAGGTTGTTCAGCATGCAATGGGAAAGCCTGTGAGGATTTTGTCTGAAATCTGCATTATTTTGAACAATGCCGGTGTTTTGGTGGTTTACTTGATAATCATGGGGGATGTTATGTCTGGTTCCTCTCACCATATGGGGGTTTTTGATCAGTTAATGGGGAATGGGGCGTGGGATCAAAGGAAGATTGTGGTTTTAGTTGTCATGGTGGTTTTCCTTGCTCCCCTTTGTTCACTTGACAAGATCGATTCATTGAGCTTGACCTCGGCTGCCTCCGTGGCTCTTGCTGTTTTGTTCGTCGTTGTTGCTTTTACGGTTGCTTTCATCAAGCTCGTGGAAGGACGGATTGATTCTCCCAGATTTGCTCCTGATCTTAGCTCCAAAACTGCAATTTTGGATTTTCTTGTTGCGATACCCATCATGACCAATGCATATGTTTGCCAGTTTAATGTGCCGCCAATATATAATGAGCTTGAACAACGGTCTCCTCGAAAGATGAACACGGTTGGGAGGTACACCACTGTTTTGTGCATCGTAGTTTATGCTTGCACTTCCATATCGGGTTACCTGCTCTTTGGGAAAGACACAGAGGCTGATGTACTGACTAATTTTGATAAGGATCTTGGAATTCGGTATAGCTCGGTCTTGAACTATATTGTCCGGATTGGCTACATTCTTCATTTGATACTTGTTTTCCCTGTTATTCATTTTTCATTGCGCCAAACAGTGGACGCATTATTGTTTGTGGGATCACCTCCTCTTTCAGAAAGTAAGAAGAGATCTTTGGGGTTGACTGCGGTTCTGTTGGTCCTCATATATATTGGGTCTACTATGATTCCAAACATCTGGACAGCTTTTAAGTTCACTGGGGCAACCACGGCTGTTTCATTGGGTTTTATATTTCCTTCTCTTGTTTCTTTGAGACTAAAACATCTGGGAGATCTAAGCTACGGAGAATGGGTTTTGTCATGGTTGATGTTGGTATTAGCTGTGACTGTTAGCATAGTAGGAGTTGTTAGCAATGTTTATAGCCTTCAGAGTAAGTCTTAG 1446 0.4232 MSNRNEYSSLPVSSYLELQRQNESSKSVGIPSYDESEVYLGSKIEDEDEDFETDIDNYPLVIVGSNKGSGIPGAVFNLTTTVIGAGIMALPATMKVLGLVLGIILIILMGILSEISVELLVRFSVLCKASSYGEVVQHAMGKPVRILSEICIILNNAGVLVVYLIIMGDVMSGSSHHMGVFDQLMGNGAWDQRKIVVLVVMVVFLAPLCSLDKIDSLSLTSAASVALAVLFVVVAFTVAFIKLVEGRIDSPRFAPDLSSKTAILDFLVAIPIMTNAYVCQFNVPPIYNELEQRSPRKMNTVGRYTTVLCIVVYACTSISGYLLFGKDTEADVLTNFDKDLGIRYSSVLNYIVRIGYILHLILVFPVIHFSLRQTVDALLFVGSPPLSESKKRSLGLTAVLLVLIYIGSTMIPNIWTAFKFTGATTAVSLGFIFPSLVSLRLKHLGDLSYGEWVLSWLMLVLAVTVSIVGVVSNVYSLQSKS 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5107g00012 481 Pfam Transmembrane amino acid transporter protein 69 470 IPR013057 -
Vium5107g00012 481 PANTHER AMINO ACID TRANSPORTER 66 465 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5107g00012 Vium-Chr5107 67448 69605 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5107g00012 5 481 Amino Acid or Auxin Permease AAAP Family AT1G80510 70.842 0.0 642
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5107g00012 - - var:108333183 767.689