Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5104g00001 ATGGCTTCGCCGCCACCGTTAACGCTAAACGTCGTCGGATCAGACACAGACAACGCGTTCCCGACCGTCGCTTCGAGTTCCCTAACGCCGCCGTCCCCGCACCGTTCGTCTCCTTTACAGAGCCTCAGTCCCAGCATTCTCATCATCGTCACGGTCCTCGCCGTCACCGTTATTGTTTCTCTCGCGCTCTGCTTCCTCCTCCGCCACCTCAATCGCCGCTGCCTCCGCCGCTTCTCCTCCTCCTCCGCCGCGCCCTCCGCATCCGCCTCCGCCGCGCCGATATTCTCCTCCAGCCGCCGCATCTCGCCGGAGATTGTGCTCTCCTCGTCCTCCGCCGCTGTCGCCGCCTCAGTCATCGACACGCTGCCGCTATTCACGTTCTCCTCCGTCACGCGCCGCTCTTCCTCCGCCGCCGCCGACTGCGCGGTCTGCCTCTCCAAATTCCACCACCACGACCTCCTCCGCCTCCTCCCTCTCTGCTGCCACGCCTTCCACGCCGAGTGCATCGACACCTGGCTCCAGTCCAACCTTTCGTGTCCGCTCTGCCGCTCTCCCATAGCCGCCGCGGAATCCGACATGGCCAAAATCCTCCGCCCGCCGTCCTCCACCGCCGGCAGCAGCGACAGCTTCCGCCTCGAGTTAGGCAATATCAGCCGCCGTGGCGCCGAAGGCGCCGCGGCCACCACCGCTCGCGGAGATTCACGGTCCCGGTCCTATTCCATTGGTTCGTTTGATTATTTGGTAGATGATGAGTCTGAGGTTGCTTTCAGCCACGCCCGCCGGAGGAGCGAGGACGATGCGAAGGAGTTTATGGCCAACGAGACTCAGACCCCGTCCACTCACAACGAGGCGAGTCTGGCCAGCGAGGTCGCCGGCGTCAGGAGCTGGCTTAAGGACTACATGGATAGGTTTTCTGCTTCTATCTCGTCAAGAACAGCGTCTTTTCGAAGCTCCGGAAGGTTCTTCAGCGGTGGCGGGAGTAGTCGGCGAAGCGACGTCGTTCCAGTGGTGGCAGCGGAATACGACTTGGAAGGAAACCGAATTGGTGAAGAGATAAGCGAAATGTTCCGATGGCTTTCAGGGGTATGA 1089 0.6198 MASPPPLTLNVVGSDTDNAFPTVASSSLTPPSPHRSSPLQSLSPSILIIVTVLAVTVIVSLALCFLLRHLNRRCLRRFSSSSAAPSASASAAPIFSSSRRISPEIVLSSSSAAVAASVIDTLPLFTFSSVTRRSSSAAADCAVCLSKFHHHDLLRLLPLCCHAFHAECIDTWLQSNLSCPLCRSPIAAAESDMAKILRPPSSTAGSSDSFRLELGNISRRGAEGAAATTARGDSRSRSYSIGSFDYLVDDESEVAFSHARRRSEDDAKEFMANETQTPSTHNEASLASEVAGVRSWLKDYMDRFSASISSRTASFRSSGRFFSGGGSSRRSDVVPVVAAEYDLEGNRIGEEISEMFRWLSGV 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5104g00001 362 CDD RING-H2_EL5-like 140 183 - -
Vium5104g00001 362 FunFam E3 ubiquitin-protein ligase ATL4 114 188 - -
Vium5104g00001 362 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 193 IPR013083 -
Vium5104g00001 362 Pfam Ring finger domain 140 183 IPR001841 -
Vium5104g00001 362 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 38 288 - -
Vium5104g00001 362 ProSiteProfiles Zinc finger RING-type profile. 141 183 IPR001841 -
Vium5104g00001 362 SUPERFAMILY RING/U-box 119 188 - -
Vium5104g00001 362 SMART ring_2 141 182 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5104g00001 Vium-Chr5104 4318 5872 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5104g00001 25 212 C3H Transcription Factor Family AT4G28890 33.854 1.98e-22 95.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5104g00001 K10663 - gmx:100776516 429.869