Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium50g00001 ATGGAAGACAGTATCCTATGTAAACACACACTCCATCACACCCTCACCAAGAAGCTCCTCTCAACCAAAAAATCCCAAACCAATTCAAACACAGACCGCAGAGTAGTCCGGATATCATACACTGATCCGGATGCCACCGACTCTTCCAGCGACGACGAATCCTTCCCCTTTGCCCGCCAGAGAATCAAGCGCTATGTCAATCACATTGAGATACAAACCGCCACCGCCGCTGCCCCCAACGTCCTTTCCAATGCTCGCAAGAGGCCCGCCGCCGAGCCATGCCGCCGCCAAGTCAAGCTCCACTCCGGCAAGAAGTTCCGCGGCGTCCGCCAGAGACCGTGGGGGAAATGGGCCGCCGAGATTCGAGATCCGGCCAGAAGGGTGCGTCTCTGGTTGGGAACTTACGACACTGCCGAAGAAGCGGCCATGGTCTACGACAATGCCGCTATCAGGCTTCGCGGCCCGGACGCCTTGACAAACTTTGTAACGCCGCCGCAAAAAGAACCTCCGCCGGCTGCGGCTGCGGAGGTTCCCGAATTGAAGGTCGGCGTGGCCGAAGAGGCCTCTGGGTCCGGGTACGACTCCGGCGACGATCATTGCCACCACAACCTCTCCTCCCCCACTTCGGTGCTCCACTTCCGAAGCAACTCGAACGAAGAGAATTCAGAGAAAGCCGAGGAAGGGTTGAGAGAGTGCCAGGGTGAGACCGAAACGAGTTGGTTCGACGAAAAGGGAGAGTTTATGTCGCTGGAGAACTTGCCGGAGTGGAACGACGTGTTTAATTTCGAAGCCCCGGAGTACCCTCTTTTGTTTGAAGAAGAGCGCGTAGTAGATGAGTCCCAGATGTTGGGCGAAAACATGGCGTTTTCCCCGGGCGAAGCTTTCAGCGACACAAGTAGTATTTTGCTTGCGGATTCCCTCATAGATTTCGACAAAGCGTGCTCTCCATCCACCTTCTGCCAAGTGGACGATTACTTCCAAGACATTTTGCTAGCTTCTGATCCTCTCGTTCTGCTCTGA 1020 0.5549 MEDSILCKHTLHHTLTKKLLSTKKSQTNSNTDRRVVRISYTDPDATDSSSDDESFPFARQRIKRYVNHIEIQTATAAAPNVLSNARKRPAAEPCRRQVKLHSGKKFRGVRQRPWGKWAAEIRDPARRVRLWLGTYDTAEEAAMVYDNAAIRLRGPDALTNFVTPPQKEPPPAAAAEVPELKVGVAEEASGSGYDSGDDHCHHNLSSPTSVLHFRSNSNEENSEKAEEGLRECQGETETSWFDEKGEFMSLENLPEWNDVFNFEAPEYPLLFEEERVVDESQMLGENMAFSPGEAFSDTSSILLADSLIDFDKACSPSTFCQVDDYFQDILLASDPLVLL 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium50g00001 339 MobiDBLite consensus disorder prediction 187 231 - -
Vium50g00001 339 PRINTS Ethylene responsive element binding protein signature 106 117 IPR001471 GO:0003700|GO:0006355
Vium50g00001 339 PRINTS Ethylene responsive element binding protein signature 128 144 IPR001471 GO:0003700|GO:0006355
Vium50g00001 339 SUPERFAMILY DNA-binding domain 105 162 IPR016177 GO:0003677
Vium50g00001 339 MobiDBLite consensus disorder prediction 202 216 - -
Vium50g00001 339 MobiDBLite consensus disorder prediction 22 53 - -
Vium50g00001 339 CDD AP2 104 161 IPR001471 GO:0003700|GO:0006355
Vium50g00001 339 FunFam Ethylene-responsive transcription factor 2 104 163 - -
Vium50g00001 339 MobiDBLite consensus disorder prediction 217 231 - -
Vium50g00001 339 Gene3D AP2/ERF domain 104 163 IPR036955 GO:0003700|GO:0006355
Vium50g00001 339 SMART rav1_2 105 168 IPR001471 GO:0003700|GO:0006355
Vium50g00001 339 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 33 242 - -
Vium50g00001 339 ProSiteProfiles AP2/ERF domain profile. 105 162 IPR001471 GO:0003700|GO:0006355
Vium50g00001 339 Pfam AP2 domain 105 154 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium50g00001 Vium-Chr50 17138 18864 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium50g00001 7 220 AP2-EREBP Transcription Factor Family AT4G27950 48.879 4.92e-57 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium50g00001 AP2 8.6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium50g00001 - - gmx:100807598 451.825