Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5089g00006 ATGGAGGGCAGAACGAGCTCTGTGCTCCCACCTGGCTTCAGGTTTCACCCCACTGATGAGGAACTAATCGTGTACTACCTTTCTAACCAAGCCACATCAAAACCATGCCCTGCATCAATAATTCCAGAAGTTGATATCTATAAGTTTGATCCGTGGGAATTACCTGAGAAAACAGACTTTGGAGAGAATGAATGGTACTTCTTTACCCCAAGGGAGAGGAAGTACCCAAATGGGGTGAGGCCTAACAGAGCAACTGTGTCTGGGTACTGGAAGGCCACTGGTACTGATAAAGCAATCTACAGTGGCTCTAAGCATATTGGGGTCAAGAAAGCTTTGGTCTTTTACAGGGGTAAGCCACCAAAGGGTATCAAGACAGATTGGATCATGCATGAGTACAGATTAATAGGATCAAGAAGACAAACCAATAGACAAATTGGATCCATGAGGCTAGATGACTGGGTCTTGTGTAGGATCTACAAGAAGAAGAACATGGGAAAATCATTGGAGGCAAAAGAGGACTACCCAATAGCCCAAATCAATCTCATACCACCAAATAATGAGACTCAACAAGAAGTGATGAAATTTCCAAGGACTAGTTCCCTTACTCATCTTTTGGATATGGATTACTTGGGTCAAATATCACACATACTATCTGATGCATCATACACTTCAACCTTTGATTTTCAACTTAACACTGCCAATGGTGGAATAGACCCCTTCATAAAGCCACAGCCACTTGAAATTCCCAATAGCCTTTATGCAGCAGATTCAGGGAAGTACCAAGTGAAACAGAACAGCACCATCAACCCCACCATATTTGTAAACCATGTCTATGATCAGAGAGGATAA 849 0.4264 MEGRTSSVLPPGFRFHPTDEELIVYYLSNQATSKPCPASIIPEVDIYKFDPWELPEKTDFGENEWYFFTPRERKYPNGVRPNRATVSGYWKATGTDKAIYSGSKHIGVKKALVFYRGKPPKGIKTDWIMHEYRLIGSRRQTNRQIGSMRLDDWVLCRIYKKKNMGKSLEAKEDYPIAQINLIPPNNETQQEVMKFPRTSSLTHLLDMDYLGQISHILSDASYTSTFDFQLNTANGGIDPFIKPQPLEIPNSLYAADSGKYQVKQNSTINPTIFVNHVYDQRG 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5089g00006 282 Pfam No apical meristem (NAM) protein 10 134 IPR003441 GO:0003677|GO:0006355
Vium5089g00006 282 FunFam NAC transcription factor 18 165 - -
Vium5089g00006 282 SUPERFAMILY NAC domain 5 161 IPR036093 GO:0003677|GO:0006355
Vium5089g00006 282 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 8 198 - -
Vium5089g00006 282 Gene3D NAC domain 18 166 IPR036093 GO:0003677|GO:0006355
Vium5089g00006 282 ProSiteProfiles NAC domain profile. 9 161 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5089g00006 Vium-Chr5089 35275 36736 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5089g00006 1 216 NAC Transcription Factor Family AT1G69490 67.544 3.24e-114 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vium5089g00006 NAM 2.2e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5089g00006 - - gmx:100170717 531.561