Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5089g00001 ATGGGAAGGATGCCATGCTGTGAGAAGGTAGGATTGAAGAAAGGACCATGGACTCCAGAAGAAGACAAGAAGCTCCTCGACTACGTTCGGAAGCATGGCCATGGAAACTGGCGTTCAGTGCCTGCCAAAGCCGGTCTTGAAAGATGTGGAAAGAGTTGCAGATTGAGGTGGATTAACTATCTCAAACCTGGTATCAAACGAGGAAACTTCAGCGAGGAGGAAGACCGTACCATTCTTCAACTTCATGCTCTTCTTGGAAACAGATGGTCAATCATAGCAGCTCACCTTCCCCAAAGAACCGACAATGAGATCAAGAACTATTGGAATACCAACATCAAAAAAAGACTCATCAGAATGGGCTTAGATCCCATTACCCACAAAACATTTAATCAGAACACGTTTGAACCTTTTGGTGGTGGCCATGACCAGTCCAAGGACACCACCAATATCAGCCACGTGGCTCAATGGGAGGGTGCTCGACTTGAAGCTGAAGCCAGAGGATCTATGTTGCAACTTGGATCCTCGCATCTGTCTGGGCTCATTTTGAGAAAAATTCCAACTGAACCTTATCTTTCATCACATTCAGTGTCAACCGAAAACAACACAGCGTATAACATGTATGCCCTCGTGCTTGCCCCAAATCATGATTTTCGGTCATCTGTATCCACTTTGAGCATTCCAACGCTTCCTGCAGTTTCTAATACTCCACATATCACGACTAAAGAAAGTTCACTTTCATATAAGAGTGACAATAGTATCATGGGAGGTAGTGGCCAAAGTCAAAAGGTAACGGAAGGTTGGGTATCAAACCTACAAGATGATGACATTATGGTGGCTGTGGAAGCATTCAGAACTGCGAGGTCTGAGACTATCGAAGAGCTGTTTAATGAATCCACTTCCATTTAG 906 0.4459 MGRMPCCEKVGLKKGPWTPEEDKKLLDYVRKHGHGNWRSVPAKAGLERCGKSCRLRWINYLKPGIKRGNFSEEEDRTILQLHALLGNRWSIIAAHLPQRTDNEIKNYWNTNIKKRLIRMGLDPITHKTFNQNTFEPFGGGHDQSKDTTNISHVAQWEGARLEAEARGSMLQLGSSHLSGLILRKIPTEPYLSSHSVSTENNTAYNMYALVLAPNHDFRSSVSTLSIPTLPAVSNTPHITTKESSLSYKSDNSIMGGSGQSQKVTEGWVSNLQDDDIMVAVEAFRTARSETIEELFNESTSI 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5089g00001 301 CDD SANT 69 112 IPR001005 -
Vium5089g00001 301 Gene3D - 69 116 - -
Vium5089g00001 301 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vium5089g00001 301 CDD SANT 16 61 IPR001005 -
Vium5089g00001 301 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Vium5089g00001 301 FunFam MYB-related transcription factor 13 66 - -
Vium5089g00001 301 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vium5089g00001 301 SMART sant 66 114 IPR001005 -
Vium5089g00001 301 SMART sant 13 63 IPR001005 -
Vium5089g00001 301 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Vium5089g00001 301 Gene3D - 13 66 - -
Vium5089g00001 301 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 237 - -
Vium5089g00001 301 FunFam MYB transcription factor 68 129 - -
Vium5089g00001 301 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vium5089g00001 301 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Vium5089g00001 301 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5089g00001 Vium-Chr5089 11262 12677 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5089g00001 1 166 MYB Transcription Factor Family AT3G01140 69.880 3.36e-86 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium5089g00001 Myb_DNA-binding 6e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5089g00001 K09422 - gmx:100790887 441.425