Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5085g00011 ATGATGGCTCGACAATTGTGTGAAGACAAATCCAAGGACATGGCTTCATCGACTGGTCTGTTCTACCCTGATGTGTCATCAAACAGCCCAACTCTCCAACCCCATCTGATGAACCACATCCAAGGCTTTGTGACCGACCCAGAGATGTTCAACCTCACCACTGGCATGGAGATGATAGGGTTTTCCAAGAATCTTCATCCACACAGTGAAAGCAACGGGGTCATGTGGAAAAGTTTCTTCGGGAAACCAAGTCAACACGCGGGTCCTTCCTCTTCCAAAACTATGAACGAGTCTTCTTGCAATTTTTATAACCAGCACGAGTATAGCAATAAGCAAGACTTCACATCAGGGATTTCAGAAACAAGTAGCGAAAATTTGATAGTCGGTGGTGCCCATGATTCTGCCCCGTGGCAAGAGAACAGGCTAATGCTTGATGATTCTTCCTTAAGGTGCGTGTTCCCCTGTGAAGGTAACGAAAGGCCCAGTCAAGGTCTTTCACTCTCTCTCAGTTCAACCAACCCTTCGAGTATTGGGTTGCAATCTTTCGAGCTAAGACAAACAAACCATCATCAGCATCTTTCTGATTTTGTTTCGAGAGACGGGTATTTTGGAAAATCGGTCAATGCTCAACAACAGCAACAAGTGTTGCAAGACGGGTACATGAGTCCTAACAAAGCTGCAAATATTTATCAGGGACATTTTCTAATCAAGAACTCCAAGTTCTTGGTGCCTGCACAGCTCCTTCTGAACGAGTTTTGTAGTCTTGGAACAAAGGAAAATGACGTGCAAAAGCAGAAGCAGTCTCTAAAGAACAAGCCGTGGGAAGAGGGTAACAACGGTGGTGGTTCCTCAAAGAACCATTCTCTTGGCTCTCTAGAGTTCGTGGAGTTGCAGAAGAGAAAGACAAGGCTGCTATCGATGCTGGAAGAGGTTGATAGAAGATACAAACATTACTGTAACCAAATGAAGGCTGTGGTCTCCTCCTTTGAAGCAGTGGCGGGTAACGGAGCAGCCACAGTTTATTCGGCTTTGGCTTTGAGAGCCATGTCTCGCCATTTTAGGTGCCTGAAAGATGGAATCATGGAACAAATTCAAACCACCAGAAAAGCTATGGGAGAGAAAGACCCCGTTGCACCAGGAACAACAAGGGGCGAAACACCGAGGCTTAAAATCATTGACCAATCACTGAGACAACAAAGGGCCTTTCAACAAATTAGCATGATGGAAACCCATCCCTGGAGACCTCAACGTGGCCTTCCCGAACGATCCGTTTCAGTTCTTCGGGCTTGGCTTTTCGAGCACTTTCTTCACCCGTACCCAAGTGATGTCGATAAACACATCCTAGCCCGCCAAACCGGTCTCTCCAGAAGTCAGGTTTCGAATTGGTTTATTAACGCGAGGGTGAGGCTGTGGAAGCCGATGGTGGAGGAGATGTACTTGGAAGAAGAGAAGGAGCAACAGAACGACGTCGCATCGTCGGAGGGAGGAGGCACCAATCCCGAGGGTGATCAGAACGCGGCAAGCGAGGATCAGAAGCCGACGCAGGCTCGGCTCCTCCGAATTGACTCGGAGATGTCGTCCATGGTGAGCAACACGGAGCAGAAAAACGACAGCAAGAGCGGAAAAAGCGTCCAAAATGACGAGCAAATGAATGAGAGCAACCATCCCGCGGAGGCGTTCGGGGCGGTGGAGCTTGACTTTTCGTCATACGCGCAGCAGTCCTCCGGCGTGGTCGGTTACGATGGTGACAGCGGGAACGAGAGGTTCCGGGGTGGCGGTGGGGGCGTGTCGTTGACGCTAGGGTTACAGCAGCAGGGTGAAAGCGGGGTGAGTTTAGCGTTCCCGCCAGCGACTCAAAGCTCGATGTTCTACCCACGGGACCATATAGAAGAGTGTCAAACAGTCGAGTACTCTCTTTTGGACGGCGAAGGACAAAACATGCCGTATAGGAATCTCATGGGGACACAATTGCTCCATGATTTGGTATGA 1989 0.4927 MMARQLCEDKSKDMASSTGLFYPDVSSNSPTLQPHLMNHIQGFVTDPEMFNLTTGMEMIGFSKNLHPHSESNGVMWKSFFGKPSQHAGPSSSKTMNESSCNFYNQHEYSNKQDFTSGISETSSENLIVGGAHDSAPWQENRLMLDDSSLRCVFPCEGNERPSQGLSLSLSSTNPSSIGLQSFELRQTNHHQHLSDFVSRDGYFGKSVNAQQQQQVLQDGYMSPNKAANIYQGHFLIKNSKFLVPAQLLLNEFCSLGTKENDVQKQKQSLKNKPWEEGNNGGGSSKNHSLGSLEFVELQKRKTRLLSMLEEVDRRYKHYCNQMKAVVSSFEAVAGNGAATVYSALALRAMSRHFRCLKDGIMEQIQTTRKAMGEKDPVAPGTTRGETPRLKIIDQSLRQQRAFQQISMMETHPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMVEEMYLEEEKEQQNDVASSEGGGTNPEGDQNAASEDQKPTQARLLRIDSEMSSMVSNTEQKNDSKSGKSVQNDEQMNESNHPAEAFGAVELDFSSYAQQSSGVVGYDGDSGNERFRGGGGGVSLTLGLQQQGESGVSLAFPPATQSSMFYPRDHIEECQTVEYSLLDGEGQNMPYRNLMGTQLLHDLV 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5085g00011 662 MobiDBLite consensus disorder prediction 272 287 - -
Vium5085g00011 662 Gene3D - 416 478 - -
Vium5085g00011 662 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 134 513 - -
Vium5085g00011 662 ProSiteProfiles 'Homeobox' domain profile. 410 473 IPR001356 GO:0003677
Vium5085g00011 662 FunFam BEL1-like homeodomain protein 4 416 478 - -
Vium5085g00011 662 Pfam Homeobox KN domain 430 469 IPR008422 GO:0003677|GO:0006355
Vium5085g00011 662 MobiDBLite consensus disorder prediction 527 553 - -
Vium5085g00011 662 MobiDBLite consensus disorder prediction 481 514 - -
Vium5085g00011 662 MobiDBLite consensus disorder prediction 527 554 - -
Vium5085g00011 662 MobiDBLite consensus disorder prediction 262 287 - -
Vium5085g00011 662 CDD homeodomain 413 474 IPR001356 GO:0003677
Vium5085g00011 662 Pfam Associated with HOX 236 360 IPR006563 -
Vium5085g00011 662 MobiDBLite consensus disorder prediction 490 512 - -
Vium5085g00011 662 SUPERFAMILY Homeodomain-like 414 479 IPR009057 -
Vium5085g00011 662 SMART prehox3 230 362 IPR006563 -
Vium5085g00011 662 SMART HOX_1 413 477 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5085g00011 Vium-Chr5085 86467 90513 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5085g00011 139 662 Homeobox Transcription Factor Family AT5G41410 48.427 2.05e-141 424
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Vium5085g00011 POX 1.6e-46 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5085g00011 - - gmx:100792789 993.03