Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5085g00010 ATGGCAGCGACAACTACAACAACTTTCCTCAAACTTCAAAACCAGCCCACCAAGCCCAAACGACGCAAGTATCGAGAAACGACAATCTCCGCTGCCGCTTCTCCAAACCACACCCAAACGATTCCTCATCGTCGCACTCCACAATCCCCTATATGTTCCCAAACCCCATCCAAGCCCCAACCCGAACCCGAACCACCTGCATTGCCCGAATCACCCTCCACCCACACGATCCGCTTCTCCCCGGGGCGCTTCTCCCCCATAATGGACTTCACCCACTCCTCCCCCACCGCCAACGGCCACCACCCCTCCCAGCCACAGCCCCACGACTTCCCCTCCAGCTTCTCCAAGTTTAACTCCGCCCTCACCGCGGGCCTTTTGAACCCAATGTCCCCCCCGCCAGACAAGACCCGATCCAGCCCCACGCTCTTCGAAATGATGGCCAGCGAGCCCGATGTCCACCACAGGCCCACCACCCACATCCCGCCCACCACCGTCGCCGCCGCCGCCGCTGCGTCGTCGCTGCACAAACCCCAGATTCTCGATCGCCACGCCCTCATGATGCAGCGGATTTCGGACCTCTTGGGGTCCCGCAGCCCCGGGAACCAGTTCAACGATGCCGCTTCCAGCGATATCAAGCTCACGCTCAGCTCCAAAGACGGAATCAGTGTCTCCATGAACGTGCATCGCCAAATCCTCGTCGCGCACAGTAGGTTCTTCTCGGTGAAGCTCTCCGATCGCTGGACCAAGCAGCAGCAGCAGCGCTCGCCGGTTCCCTACGAAGTTGAAATCGCCGATTGCGACGATGTGGAGGTTTACATCGAGACCTTGAGGTTGATGTATTGTAAGGATCTTAGGAAGAAGCTCATGAGAGAGGATGTCTCCAGAGTTCTCGGTATCTTAAAGGTTTCAGCTGCCATTGGGTTTGATGCTGGGGTTTTGTCTTGTTTGGAGTACCTGGAAGCGGCACCTTGGGCCGAGGATGAGGAAGAGAAGGTGGCATCGCTCCTTTCTGAGCTTCGTCTTGAAGCGGTTGGCGCAGGGGAGGTTTTGAAGAGGGTTTCAACTGATGCTGCTGCCAATGGAAATGAAGAGGGGAGTGATAACGAGGAGGTTCTTCTTAAGCTTATTCGTGTGGTTCTTGAAGGTAAGGATGAGAAGGCCCGGCGTGAGATGAAAGGGTTAGTGTCGAAGATGCTGCATGAAAATTCTTCTCAGAATGATCTTCGGAAGGAGTCGCTGTACTTAGCATGTGATGACTGTCTGCAGTTACTTCGTGACCACTTTTTGCAGGCTGCGGGTTCGCATTTGCAGGATGTGAGTCAAATTGCAAGACAAGCAGACAATCTGCATTGGATTTTGGATATTTTAGTTGACAGACAGATTGCTGAGGATTTCCTGAAAACATGGGCCTCTCAAGCAGATTTGGCTGAAGCTCATTCTAAGGTGCCAGCAGTTCACAGGTTTGAGGTTAGCAGAGTTACAGCAAGGTTGTTTGTTGGGATTGGGAAAGGACAGTTGTTGGCTTCTAAAGATGTCAGGTGTTTGCTTCTAAAAACTTGGTTGGTGCCCTTTTATGATGACTTTGGTTGGATGAGGAGGGCATCCAAGGGGCTTGATAGGCACCTAATTGAGGATGGTCTTAGTAACACTATTCTTACTCTGCCACTCTCCTGGCAACAGGATATTTTGCTTGCTTGGTTTGATCGTTTCTTGAATTCCGGTGAAGATTGCCCAAATATTCAAAGAGGGTTTGAAGTTTGGTGGAGAAGGGCTTTCTGGAAGAGGAATGGAGAGCAAGAACGGACAAGACAATTACGAATTACAACTACATCAGTTGAGAACCATTGA 1848 0.5211 MAATTTTTFLKLQNQPTKPKRRKYRETTISAAASPNHTQTIPHRRTPQSPICSQTPSKPQPEPEPPALPESPSTHTIRFSPGRFSPIMDFTHSSPTANGHHPSQPQPHDFPSSFSKFNSALTAGLLNPMSPPPDKTRSSPTLFEMMASEPDVHHRPTTHIPPTTVAAAAAASSLHKPQILDRHALMMQRISDLLGSRSPGNQFNDAASSDIKLTLSSKDGISVSMNVHRQILVAHSRFFSVKLSDRWTKQQQQRSPVPYEVEIADCDDVEVYIETLRLMYCKDLRKKLMREDVSRVLGILKVSAAIGFDAGVLSCLEYLEAAPWAEDEEEKVASLLSELRLEAVGAGEVLKRVSTDAAANGNEEGSDNEEVLLKLIRVVLEGKDEKARREMKGLVSKMLHENSSQNDLRKESLYLACDDCLQLLRDHFLQAAGSHLQDVSQIARQADNLHWILDILVDRQIAEDFLKTWASQADLAEAHSKVPAVHRFEVSRVTARLFVGIGKGQLLASKDVRCLLLKTWLVPFYDDFGWMRRASKGLDRHLIEDGLSNTILTLPLSWQQDILLAWFDRFLNSGEDCPNIQRGFEVWWRRAFWKRNGEQERTRQLRITTTSVENH 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5085g00010 615 ProSiteProfiles BTB domain profile. 209 288 IPR000210 GO:0005515
Vium5085g00010 615 MobiDBLite consensus disorder prediction 1 15 - -
Vium5085g00010 615 MobiDBLite consensus disorder prediction 1 116 - -
Vium5085g00010 615 Gene3D Potassium Channel Kv1.1; Chain A 190 322 IPR011333 -
Vium5085g00010 615 MobiDBLite consensus disorder prediction 87 116 - -
Vium5085g00010 615 MobiDBLite consensus disorder prediction 54 70 - -
Vium5085g00010 615 Pfam BTB/POZ domain 202 297 IPR000210 GO:0005515
Vium5085g00010 615 PANTHER OSJNBA0011J08.25 PROTEIN-RELATED 192 601 IPR038920 -
Vium5085g00010 615 MobiDBLite consensus disorder prediction 29 53 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5085g00010 Vium-Chr5085 69697 73745 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Vium5085g00010 BTB 0.00025 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5085g00010 - - ccaj:109800730 1016.91