Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5085g00009 ATGGGTTTCCCTGTGGGCTACACGGAGCTTCTCTTCCCGAAGCTTCTCCTCCAACTCCTCTCCGTCTTGGGCTTCCTCCGGAGGCTCATTTGCACCGTCCTCCGTTTCATGGGCCTCCACGATTTCCTCGAGCCCGACATTGCTTGGCCCGAAGCCCACACGGGAATGCCAGAATTCGAATCCGTCTCCGCCACGTTTATCCGGGAAATCCTCCCCGTAGTTAAGTTCCACGACCTCCTCGACCCACCCGAAACCTGCGCCGTCTGTCTCACGGAGTTCGAGAAAAACGATGAGATCAGACGGCTGGCCAACTGTCGACACATATTCCACCGAGGATGTTTGGACCGTTGGATGGGTTACGATCAGAAAACGTGCCCTCTTTGCAGAACACCCTTCATACCGGACGATATGCAAGGTACTTTCATCGAAAGACTCTGGGCTGCGTCTGGGATCTCTGAACAGCCTCTTGTTCCTGCTTCCTAG 483 0.5528 MGFPVGYTELLFPKLLLQLLSVLGFLRRLICTVLRFMGLHDFLEPDIAWPEAHTGMPEFESVSATFIREILPVVKFHDLLDPPETCAVCLTEFEKNDEIRRLANCRHIFHRGCLDRWMGYDQKTCPLCRTPFIPDDMQGTFIERLWAASGISEQPLVPAS 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5085g00009 160 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 132 IPR013083 -
Vium5085g00009 160 SMART ring_2 86 128 IPR001841 -
Vium5085g00009 160 SUPERFAMILY RING/U-box 67 135 - -
Vium5085g00009 160 PANTHER RING ZINC FINGER PROTEIN-RELATED 26 147 - -
Vium5085g00009 160 ProSiteProfiles Zinc finger RING-type profile. 86 129 IPR001841 -
Vium5085g00009 160 Pfam Ring finger domain 85 129 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5085g00009 Vium-Chr5085 55005 55960 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5085g00009 1 160 C3H Transcription Factor Family AT1G63840 56.024 4.21e-58 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5085g00009 K16281 - gmx:100789020 255.758