Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5085g00007 ATGTCTTCTGATCTCTACTCTTACGACACCACTTTCCACACACATTCAAACTCAGACTTTCTCTCCTCTGATGGAGTTGGAGACCTTCCTTTTCTCTCTGACTCTTTTCCTTTCTTCCCCAATTCTCCCTCTAACGTAGCTCAGGACAATTCCAATTCCAATTCCAATTCTCTCCCTTCTCTCGACCCCTTTTCCCCATCTTTTTTCTCTTTCTCCCCTCCAAGTTCCCACTTGGAAAGTCTCAGCCTTTACCATGCCAACCGCGTGCATCCGCTGTCAAATGGCCAAAACTTGGCGAACGAGTTTGCAACTTTCTCAGCTTTTGATGCCTCTGAAGTGAAGACTGAGGAAGCCCAATTGGGTGTTGACTGTGTCTACGCTCAACAACTCCTTCCTCACAGTTACAGTGGTGCTGAAAATTTTTCCAGGTACATGCACAGAAGCTTCAGCAGCAACTCCTTTGAAGCAAAACCAGGTTTTCTGTCACAACCTTACACTGATACTCTTGTGGACTCTCCCAAATTTCAAAGGCATGATTTGAGCTCCCCTGAAGACACTCTCTTCACCGGACAAATGAGAAGGGTTTGTAGCACCGGAGATTTGCAGAACATGAAGGAAAATCGCATGTCTCCAACGGAGGCACCGTTGTTGGAGGAATCCAACTTCAAAGTAGGGCGTTACAGTGCGGAAGAGAGGAAAGAAAGAATCTCGAAATACAGAGCCAAGAGAACCCAGAGGAATTTCAACAAGACAATTAAGTATGCATGCCGCAAGACTCTAGCAGATAATCGACCACGCATACGTGGCAGATTCGCCCGCAACGACGAAGCCATCGACAATCCCAAGGCTTCATGTTCAACACGAGACGAAGATGATGTTGGTTTCTGGATTGAAGAATTACGATTGCATGAAGAACAAGACGATGTAACAGTGGGAGCAGAACAATATTTGGGAAGGTATGGAGCAACTCAGTTTCAGTATGGTGGCTTTTGA 993 0.4592 MSSDLYSYDTTFHTHSNSDFLSSDGVGDLPFLSDSFPFFPNSPSNVAQDNSNSNSNSLPSLDPFSPSFFSFSPPSSHLESLSLYHANRVHPLSNGQNLANEFATFSAFDASEVKTEEAQLGVDCVYAQQLLPHSYSGAENFSRYMHRSFSSNSFEAKPGFLSQPYTDTLVDSPKFQRHDLSSPEDTLFTGQMRRVCSTGDLQNMKENRMSPTEAPLLEESNFKVGRYSAEERKERISKYRAKRTQRNFNKTIKYACRKTLADNRPRIRGRFARNDEAIDNPKASCSTRDEDDVGFWIEELRLHEEQDDVTVGAEQYLGRYGATQFQYGGF 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5085g00007 330 Pfam CCT motif 232 274 IPR010402 GO:0005515
Vium5085g00007 330 ProSiteProfiles CCT domain profile. 232 274 IPR010402 GO:0005515
Vium5085g00007 330 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 47 286 IPR045281 GO:0009909
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5085g00007 Vium-Chr5085 31928 34113 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5085g00007 228 297 C2C2-CO-like Transcription Factor Family AT5G15850 41.429 1.79e-10 59.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vium5085g00007 CCT 9.6e-18 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5085g00007 - - gmx:102665661 445.662