Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5085g00005 ATGGGCGGTTGCTGCTGCTGTTGTTCTTCTAAGGAGACTGTGTTGAGCGCTCCACCTGCCTACTATTATTATCCAAGAGCACCAGAGGAGCATGTTCCTCTATCATCTCACCAGGGTGCCGCTTCTTCTTTCTCTGGGCGACTCTTGGTTGATACTAATCTAGATACGTCATCTCCTGATACTTATAGACCTCCTCCTGCTCCTATCCCTTTCAATGTTACGTTTGGTACCACTCAAACTCCACCTGCAGCTCAAGAAATTCGTAGTGACAAGCATAATGCACCCTTGCTTTCTACAGATTCTAGTGCAATTCAAGAACCAGTATCTGGAGACAATCATGGGACCCCAGTTAAGATGGAAGAGCTGAAGGAATCAGAATGCAAAGTTCAGGCTGATCTAGAGATAGATTCTGCTAAGGGTTCTGAAATTGAACTTGCAAAGCCTGGAAAACCTGTAATTTTAGTAGAAGAGGAGGATACATGCCCAATTTGTTTAGAAGAATATGATGCAGAGAATCCAAAACTCGCAACAAATTGTGACCATCATTTTCACCTTGCATGCATTCTGGAATGGATGGAAAGAAGTGAAACTTGCCCTGTGTGCGATCAGGTTTCTCCCAATAATTCTCAATCTCTCTTCTATCTTCACATCATTTCGAATATGTCCTAA 669 0.4305 MGGCCCCCSSKETVLSAPPAYYYYPRAPEEHVPLSSHQGAASSFSGRLLVDTNLDTSSPDTYRPPPAPIPFNVTFGTTQTPPAAQEIRSDKHNAPLLSTDSSAIQEPVSGDNHGTPVKMEELKESECKVQADLEIDSAKGSEIELAKPGKPVILVEEEDTCPICLEEYDAENPKLATNCDHHFHLACILEWMERSETCPVCDQVSPNNSQSLFYLHIISNMS 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5085g00005 222 CDD RING-H2_AIRP1-like 157 204 - -
Vium5085g00005 222 ProSiteProfiles Zinc finger RING-type profile. 161 202 IPR001841 -
Vium5085g00005 222 FunFam Putative E3 ubiquitin-protein ligase RHB1A 138 205 - -
Vium5085g00005 222 SUPERFAMILY RING/U-box 154 206 - -
Vium5085g00005 222 SMART ring_2 161 201 IPR001841 -
Vium5085g00005 222 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 39 205 - -
Vium5085g00005 222 Pfam Ring finger domain 159 201 IPR001841 -
Vium5085g00005 222 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 154 213 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5085g00005 Vium-Chr5085 1865 4306 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5085g00005 1 203 C3H Transcription Factor Family AT5G41350 52.427 3.55e-67 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5085g00005 - - vra:106765380 436.417