Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5085g00004 ATGGGCGGTTGCTGCTGCTGTTGTTCTTCTAAGGAGACTGTGTTGAGCGCTCCACCTGCCTACTATTATCAGTATCCAAGAGCACCAGAGGAGCATGTTCCTCTATCATCTCACCAGGGTGCCGCTTCTTCTTTCTCTGGGCGACTCTTGGTTGATACTAATCTAGATACGTCATCTCCTGATACTTATAGACCTCCTCCTGCTCCTATCCCTTTCAATGTTACGTTTGGTACCACTCAAACTCCACCTGCAGCTCAAGAAATTCGTAGTGACAAGCATAATGCACCCTTGCTTTCTACAGATTCTAGTGCAATTCAAGAACCAGTATCTGGAGACAATCATGGGACCCCAGTTAAGATGGAAGAGCTGAAGGAATCAGAATGCAAAGTTCAGGCTGATCTAGAGATAGATTCTGCTAAGGGTTCTGAAATTGAACTTGCAAAGCCTGGAAAACCTGTAATTTTAGTAGAAGAGGAGGATACATGCCCAATTTGTTTAGAAGAATATGATGCAGAGAATCCAAAACTCGCAACAAATTGTGACCATCATTTTCACCTTGCATGCATTCTGGAATGGATGGAAAGAAGTGAAACTTGCCCTGTGTGCGATCAGGTTTCTCCCAATAATTCTCAATCTCTCTTCTATCTTCACATCATTTCGAATATGTCCTAA 672 0.4315 MGGCCCCCSSKETVLSAPPAYYYQYPRAPEEHVPLSSHQGAASSFSGRLLVDTNLDTSSPDTYRPPPAPIPFNVTFGTTQTPPAAQEIRSDKHNAPLLSTDSSAIQEPVSGDNHGTPVKMEELKESECKVQADLEIDSAKGSEIELAKPGKPVILVEEEDTCPICLEEYDAENPKLATNCDHHFHLACILEWMERSETCPVCDQVSPNNSQSLFYLHIISNMS 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5085g00004 223 SMART ring_2 162 202 IPR001841 -
Vium5085g00004 223 Pfam Ring finger domain 160 202 IPR001841 -
Vium5085g00004 223 ProSiteProfiles Zinc finger RING-type profile. 162 203 IPR001841 -
Vium5085g00004 223 CDD RING-H2_AIRP1-like 158 205 - -
Vium5085g00004 223 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 40 206 - -
Vium5085g00004 223 SUPERFAMILY RING/U-box 155 207 - -
Vium5085g00004 223 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 155 214 IPR013083 -
Vium5085g00004 223 FunFam Putative E3 ubiquitin-protein ligase RHB1A 139 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5085g00004 Vium-Chr5085 1865 4309 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5085g00004 1 204 C3H Transcription Factor Family AT5G41350 52.174 2.67e-65 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5085g00004 - - vra:106765380 442.965