Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5085g00001 ATGGGCGGTTGCTGCTGCTGTTGTTCTTCTAAGGAGACTGTGTTGAGCGCTCCACCTGCCTACTATTATCAGTATCCAAGAGCACCAGAGGAGCATGTTCCTCTATCATCTCACCAGGGTGCCGCTTCTTCTTTCTCTGGGCGACTCTTGGTTGATACTAATCTAGATACGTCATCTCCTGATACTTATAGACCTCCTCCTGCTCCTATCCCTTTCAATGTTACGTTTGGTACCACTCAAACTCCACCTGCAGCTCAAGAAATTCGTAGTGACAAGCATAATGCACCCTTGCTTTCTACAGATTCTAGTGCAATTCAAGAACCAGTATCTGGAGACAATCATGGGACCCCAGTTAAGATGGAAGAGCTGAAGGAATCAGAATGCAAAGTTCAGGCTGATCTAGAGATAGATTCTGCTAAGGGTTCTGAAATTGAACTTGCAAAGCCTGGAAAACCTGTAATTTTAGTAGAAGAGGAGGATACATGCCCAATTTGTTTAGAAGAATATGATGCAGAGAATCCAAAACTCGCAACAAATTGTGACCATCATTTTCACCTTGCATGCATTCTGGAATGGATGGAAAGAAGTGAAACTTGCCCTGTGTGCGATCAGGATTTGGTTTTCAACCCTCCCATTGAATAA 642 0.4377 MGGCCCCCSSKETVLSAPPAYYYQYPRAPEEHVPLSSHQGAASSFSGRLLVDTNLDTSSPDTYRPPPAPIPFNVTFGTTQTPPAAQEIRSDKHNAPLLSTDSSAIQEPVSGDNHGTPVKMEELKESECKVQADLEIDSAKGSEIELAKPGKPVILVEEEDTCPICLEEYDAENPKLATNCDHHFHLACILEWMERSETCPVCDQDLVFNPPIE 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5085g00001 213 Pfam Ring finger domain 160 202 IPR001841 -
Vium5085g00001 213 SMART ring_2 162 202 IPR001841 -
Vium5085g00001 213 ProSiteProfiles Zinc finger RING-type profile. 162 203 IPR001841 -
Vium5085g00001 213 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 142 208 IPR013083 -
Vium5085g00001 213 CDD RING-H2_AIRP1-like 158 206 - -
Vium5085g00001 213 SUPERFAMILY RING/U-box 155 209 - -
Vium5085g00001 213 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 40 209 - -
Vium5085g00001 213 FunFam Putative E3 ubiquitin-protein ligase RHB1A 139 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5085g00001 Vium-Chr5085 1500 4306 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5085g00001 1 213 C3H Transcription Factor Family AT5G41350 50.926 7.08e-68 205
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5085g00001 - - vra:106765380 412.149