Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5084g00003 ATGGTTAAGCCAGAGAAGAAGATCAACACAGAATCATCAAAGGCATTATCAGTATCTTCCTCATCACCAGCAGCATCAAGTGAGAACAAGAAGAAGTTCAAGGGAGTGAGAATGAGAAGCTGGGGCTCATGGGTGTCAGAGATTAGAGCACCAAACCAAAAAACTAGAATATGGTTGGGATCTTATTCAACTGCTGAGGCAGCAGCAAGAGCCTATGATGCTGCACTGCTTTGCCTTAAAGGCTCCTCAGCCAATCTCAACTTCCCTTCAAGCTCCTCCTCACACTACATTCCTCAAGACACTGTCATGTCCCCAAAATCAATCCAAAGAGTGGCTGCAGCTGCTGCCAACAACTTCTTAGACACTGCCATTGCTACCACCCCATCTTCTCCTCCTCTTGCTTCAACAACCTCTTCCTCTTCATTCGTCTCATCCCCATCAATCTCATCATCTCCCTCGGACCAAATTGACGATGATGTCTCACTTCTGTCACCATTTGGGGCTTACACTCCTCCTCCACCTTCTGTTAACTGTGATCAAGCAAATGAATCAATGGCTATGATGGAATATTGGTATGACTTGGAGGAGTTACAATCACCAAAGTATGTTGAGCAAATGCTAAGTGGGGCCTTTTTTGACATTGATTCCACACAGTTGTTTGATGATCTGTATGAAGAAAGTGACATTAGTTTGTGGAGTTTCTGCTGA 708 0.4449 MVKPEKKINTESSKALSVSSSSPAASSENKKKFKGVRMRSWGSWVSEIRAPNQKTRIWLGSYSTAEAAARAYDAALLCLKGSSANLNFPSSSSSHYIPQDTVMSPKSIQRVAAAAANNFLDTAIATTPSSPPLASTTSSSSFVSSPSISSSPSDQIDDDVSLLSPFGAYTPPPPSVNCDQANESMAMMEYWYDLEELQSPKYVEQMLSGAFFDIDSTQLFDDLYEESDISLWSFC 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5084g00003 235 PRINTS Ethylene responsive element binding protein signature 33 44 IPR001471 GO:0003700|GO:0006355
Vium5084g00003 235 PRINTS Ethylene responsive element binding protein signature 55 71 IPR001471 GO:0003700|GO:0006355
Vium5084g00003 235 CDD AP2 31 91 IPR001471 GO:0003700|GO:0006355
Vium5084g00003 235 Gene3D AP2/ERF domain 31 90 IPR036955 GO:0003700|GO:0006355
Vium5084g00003 235 Pfam AP2 domain 32 81 IPR001471 GO:0003700|GO:0006355
Vium5084g00003 235 MobiDBLite consensus disorder prediction 11 28 - -
Vium5084g00003 235 MobiDBLite consensus disorder prediction 128 156 - -
Vium5084g00003 235 SUPERFAMILY DNA-binding domain 32 90 IPR016177 GO:0003677
Vium5084g00003 235 ProSiteProfiles AP2/ERF domain profile. 32 89 IPR001471 GO:0003700|GO:0006355
Vium5084g00003 235 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 14 179 - -
Vium5084g00003 235 MobiDBLite consensus disorder prediction 1 35 - -
Vium5084g00003 235 SMART rav1_2 32 95 IPR001471 GO:0003700|GO:0006355
Vium5084g00003 235 FunFam ethylene-responsive transcription factor ERF014-like 31 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5084g00003 Vium-Chr5084 25415 26553 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5084g00003 1 234 AP2-EREBP Transcription Factor Family AT1G21910 43.295 2.38e-49 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium5084g00003 AP2 1.1e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5084g00003 - - gmx:100813313 296.204