Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5084g00001 ATGGCAAGAACTTTCTCCGCCGCTGCCGCTGCCGCCATCACCACCACCCACACACCAAATCCTGAACCTCAAATGGATTGGCGCTTTCTACCACCACCGCCACCACCAGATTTTGCACGGCCACTGTTGCTGCAACAGCATCAGCTTGATCTCAGTGGGGTTTGGGCTATTCTTAACGAAGAAGTACTGCAGGATAGGCTTCAATCTCCCAATATAAGTCATGTTTTTGAAGGTGATAATAGTGGATGCTCAACGATTGCCATGAATGGCCTTAGCAGGGTAAGAGTATCAGAGACAGATAAACTCTTTCTCTGTCCCATTTGCATGGATGAGTTTAAAGTGTGTGATCAAGCATACCGGTTACCCTGCACCCACACCTATTGTTCCGAATGCATTCTTCGTTGGCTTAACAGCAGCAAAACATGTCCAGTTTGCAGGCTTCAATTGAATAATAATAATAATTTGAACTCGCATGTTGAATTTCTATCAACATCATTGTCTTCAACACCATCACCATACTTTCGTTCTCCTCTGCGCCCGGAGTACCTCGTAGAATCTTCTCTCTACCCTACAGCTGGTGTAGAGAACAGTGCAAGTGGTAACTCAGATGAAGCTGATTATGATAGTGCATGTGATGAGCTTGGTGATTCTCAAGAAGATGGTGCTTCTCATACTGCTAATGATTTATGA 690 0.4493 MARTFSAAAAAAITTTHTPNPEPQMDWRFLPPPPPPDFARPLLLQQHQLDLSGVWAILNEEVLQDRLQSPNISHVFEGDNSGCSTIAMNGLSRVRVSETDKLFLCPICMDEFKVCDQAYRLPCTHTYCSECILRWLNSSKTCPVCRLQLNNNNNLNSHVEFLSTSLSSTPSPYFRSPLRPEYLVESSLYPTAGVENSASGNSDEADYDSACDELGDSQEDGASHTANDL 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5084g00001 229 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 85 176 IPR013083 -
Vium5084g00001 229 ProSiteProfiles Zinc finger RING-type profile. 105 146 IPR001841 -
Vium5084g00001 229 SUPERFAMILY RING/U-box 104 152 - -
Vium5084g00001 229 MobiDBLite consensus disorder prediction 194 229 - -
Vium5084g00001 229 Pfam Ring finger domain 105 146 IPR001841 -
Vium5084g00001 229 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 86 149 - -
Vium5084g00001 229 ProSitePatterns Zinc finger RING-type signature. 123 132 IPR017907 -
Vium5084g00001 229 SMART ring_2 105 145 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5084g00001 Vium-Chr5084 7784 8473 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5084g00001 97 149 C3H Transcription Factor Family AT3G60080 43.396 1.66e-11 60.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium5084g00001 zf-RING_2 2.7e-12 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5084g00001 - K11982 vum:124839894 442.965