Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5075g00001 ATGTCGATAAACCACTACTCCATGGACCTTCCCGAAACAACACTGTGGTGGCCCCAACAACAGCATCATCAGCAGCAATCCATCTTAATGGAAGCAACCCCGAATCCCTCCTCCACTTCCTGGCCCTCCGCAGACCCCCCGGGTCTCAACCTCAACCACCAAAACGACGACGTCGAAGAAGACGAAGAAGAAGAGGACCAAACAACAACCACTACACAGCAAGAGGAAACGGAAGACGAGAAGGAACCCATGTTCGAGAAGCCTCTAACTCCCAGCGACGTGGGGAAGCTCAACCGCCTCGTAATCCCCAAGCAGCACGCCGAGAAGTACTTCCCTCTCAGCGGTGGCGGTGGCGGCGACTCGGGCGAGTGCAAGGGGCTCCTATTGAGTTTCGAGGACGAGTCGGGTAAGTGCTGGCGGTTTCGCTACTCCTACTGGAACAGCAGCCAGAGCTACGTGCTCACCAAAGGGTGGAGCCGCTACGTCAAGGACAAGCGCCTCGACGCCGGCGACGTTGTCTTGTTCGAGCGCCACCGCGCCGATGCCCACCGCCTATTCATCGGATGGAGACGCCGGCGACACGGCGACACATCGCCGGTGCACGTTAGCGGCAGGGCGGTGGGGCACGGGAAGAGTGGCGACGGGAGTAGTAAGAATGAGGGTGGCGGCACCACTGGTGTTGGTTTGGGATGGACCAGAGGATTCTATTCTGCGCATCCTTATCCTACGCATCAGCAGCAGCTGCATAATCATCAACCCTTGCCATACCAATATGACTGTCTTCATGCAGGAAGAGGGTCCCAAGGTCAGAGAGAAAGGAGCATAGCAGAGGGGAACAGTCCCAGTTCAAGTTCGAGTTCAAGGGTACTTAGGCTTTTTGGGGTGAACATGGAATGCCAAACCGAACATGATTCTGGACCCTCCACACCCCAATCTTCCTACAATACTACCAACATGCCCTCCACACAGGGCACACAAAACCATCACCATTTCTACCATCGTCACCAACCATACTACTACTATTAG 1026 0.5565 MSINHYSMDLPETTLWWPQQQHHQQQSILMEATPNPSSTSWPSADPPGLNLNHQNDDVEEDEEEEDQTTTTTQQEETEDEKEPMFEKPLTPSDVGKLNRLVIPKQHAEKYFPLSGGGGGDSGECKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLDAGDVVLFERHRADAHRLFIGWRRRRHGDTSPVHVSGRAVGHGKSGDGSSKNEGGGTTGVGLGWTRGFYSAHPYPTHQQQLHNHQPLPYQYDCLHAGRGSQGQRERSIAEGNSPSSSSSSRVLRLFGVNMECQTEHDSGPSTPQSSYNTTNMPSTQGTQNHHHFYHRHQPYYYY 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5075g00001 341 MobiDBLite consensus disorder prediction 259 288 - -
Vium5075g00001 341 ProSiteProfiles B3 DNA-binding domain profile. 85 193 IPR003340 GO:0003677
Vium5075g00001 341 MobiDBLite consensus disorder prediction 195 224 - -
Vium5075g00001 341 CDD B3_DNA 83 183 IPR003340 GO:0003677
Vium5075g00001 341 MobiDBLite consensus disorder prediction 300 331 - -
Vium5075g00001 341 Pfam B3 DNA binding domain 85 192 IPR003340 GO:0003677
Vium5075g00001 341 MobiDBLite consensus disorder prediction 272 288 - -
Vium5075g00001 341 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 27 310 IPR044800 GO:0003700
Vium5075g00001 341 MobiDBLite consensus disorder prediction 18 93 - -
Vium5075g00001 341 MobiDBLite consensus disorder prediction 301 327 - -
Vium5075g00001 341 SUPERFAMILY DNA-binding pseudobarrel domain 80 192 IPR015300 -
Vium5075g00001 341 MobiDBLite consensus disorder prediction 56 73 - -
Vium5075g00001 341 Gene3D - 73 201 IPR015300 -
Vium5075g00001 341 MobiDBLite consensus disorder prediction 18 50 - -
Vium5075g00001 341 SMART B3_2 85 193 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5075g00001 Vium-Chr5075 36434 38632 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5075g00001 1 306 RAV Transcription Factor Family AT5G06250 43.312 1.39e-66 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vium5075g00001 B3 8e-29 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5075g00001 K09287 - gmx:100795470 406.757