Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium506g00009 ATGCCATTCAGAAGCATAGTGCGTGAGCTCAAGGAGATTGGAGAGGGTATCAGCAACATGTATAGAAGAGGGGGAGAGGGAAAGCATGTGCATCGCCATGGTAAATCTCACATTGCACCAGAATGTTCTCTACCACCATCCTCCTCCTCCCCCTCCTCCTCTTCCTCCTCCTCTTCTTCATCATCTTCTTCTTCTTCTTCATCACAGAGCCGGTGGGCTAACTTACCACCAGAGTTGCTTTTAGACATAATTCAAAGGTTGGAAGCCAGTGAAACCTCATGGCCTGCACGTAGAGCACTTGTGGCATGTTCCTCAGTTTGTAGGCTGTGGAGAGAGATAACAAAGGATGTGGTCAAGACACCAGAACAGTGTGGTTTGCTCACTTTTTCTATATCACTGAAGCAGCCTGGCCCAAGAGACTCACCAATCCAGTGTTTTATTAGGAGAGAAAGAGTGTCTTCAACATATTGTTTATATCTCGGCCTGAGCCCTGCACTTTCTGGTGATATGAGCAAACTGTTACTAGCAGCAAAGAAGATTCGAAGGGCAACATGTACAGAATTTTTAATATCATTGGTTGCTGATGATTTCTCTCGATCAAGCAACACTTACATTGGAAAGTTGAGGTCTAATTTTCTTGGCACCAAGTTCATGATTCTGGATGGCGAGTCCCCACATGATTCTTCACTTCCATTGAACTGCAAGTTGCAGCAAAGAGTCCATCTGAAGCAGGTACTTCCCAAGGTTGCTGCTGCTGCTAACTACAAAGTAGCCACAGTATCTTATGAACTCAATGTCCTCCGAACAAGAGGTCCAAGGCGAATGCGGTGTACGATGCACTTGATACCCATATCTGCAATCCAAGAAGGAGGAAGTGCTCCAACTCCTTTGAAGTTTACAAATTATCTTAATGAGCATGTATCTACCAACACCACCACCTCAGATTCAAAAGGAAGGAAGCCAGAAATTGTTGAGTTTGACACAAATGACACTGAAAATACTCAAGAATCAAGCCAGAGGGCAAGGGAACCATTGGTTTTGAAAAACAAGGCCCCTAGATGGCATGAACAACTACAATGCTGGTGCTTGAATTTCAAGGGAAGGGTTACAGTGGCCTCTGTGAAGAACTTCCAGCTCGTGGCAGCTGCTGAACCATGCCAAAATGTTTCAGCTGCTGAACAAGAAAAAGTGATACTACAATTTGGAAAAATTGGGAAGGACATATTCACCATGGATTACCGATACCCCCTCTCAGCTTTTCAAGCCTTTGCAATATGTTTGAGCAGCTTTGACACAAAACCAGCTTGTGAATGA 1314 0.4444 MPFRSIVRELKEIGEGISNMYRRGGEGKHVHRHGKSHIAPECSLPPSSSSPSSSSSSSSSSSSSSSSSQSRWANLPPELLLDIIQRLEASETSWPARRALVACSSVCRLWREITKDVVKTPEQCGLLTFSISLKQPGPRDSPIQCFIRRERVSSTYCLYLGLSPALSGDMSKLLLAAKKIRRATCTEFLISLVADDFSRSSNTYIGKLRSNFLGTKFMILDGESPHDSSLPLNCKLQQRVHLKQVLPKVAAAANYKVATVSYELNVLRTRGPRRMRCTMHLIPISAIQEGGSAPTPLKFTNYLNEHVSTNTTTSDSKGRKPEIVEFDTNDTENTQESSQRAREPLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAEPCQNVSAAEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium506g00009 437 MobiDBLite consensus disorder prediction 19 71 - -
Vium506g00009 437 SUPERFAMILY Tubby C-terminal domain-like 121 437 IPR025659 -
Vium506g00009 437 MobiDBLite consensus disorder prediction 42 71 - -
Vium506g00009 437 Gene3D - 65 118 - -
Vium506g00009 437 PANTHER TUBBY-RELATED 34 435 - -
Vium506g00009 437 Pfam F-box domain 72 119 IPR001810 GO:0005515
Vium506g00009 437 MobiDBLite consensus disorder prediction 328 342 - -
Vium506g00009 437 Pfam Tub family 133 432 IPR000007 -
Vium506g00009 437 ProSitePatterns Tub family signature 2. 422 437 IPR018066 -
Vium506g00009 437 PRINTS Tubby superfamily signature 365 381 IPR000007 -
Vium506g00009 437 PRINTS Tubby superfamily signature 254 281 IPR000007 -
Vium506g00009 437 PRINTS Tubby superfamily signature 204 228 IPR000007 -
Vium506g00009 437 PRINTS Tubby superfamily signature 347 364 IPR000007 -
Vium506g00009 437 PRINTS Tubby superfamily signature 394 413 IPR000007 -
Vium506g00009 437 PRINTS Tubby superfamily signature 188 204 IPR000007 -
Vium506g00009 437 PRINTS Tubby superfamily signature 415 437 IPR000007 -
Vium506g00009 437 ProSitePatterns Tub family signature 1. 365 378 IPR018066 -
Vium506g00009 437 MobiDBLite consensus disorder prediction 308 343 - -
Vium506g00009 437 SUPERFAMILY F-box domain 69 142 IPR036047 GO:0005515
Vium506g00009 437 Gene3D Tubby Protein; Chain A 128 437 IPR025659 -
Vium506g00009 437 CDD F-box_AtTLP-like 72 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium506g00009 Vium-Chr506 74079 77429 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium506g00009 28 437 TUB Transcription Factor Family AT1G47270 59.662 1.82e-167 474
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Vium506g00009 Tub 7.3e-105 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium506g00009 K19600 - gmx:100796250 762.296